Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4592 ATGGAGGGTCGGGGTGAGATCGGTCTTACGGGTGATGGTTTAGAGACTAGTATGATTGGGAGAATGAGGGATGATGAGTACGAAAGCCGGTCCGGAAGTGATAACTTCGAACTTGAAGGAATATCTGGTGATGAACAAGATGGCGGTGATGATCAGCGCAAGAGGAAGAAGAGATACCACAGACATACTCCTAATCAAATTCAAGAGCTTGAAAGTTTCTTCAAGGAGTGTCCTCATCCCGATGAAAAACAACGGTTGGATCTTAGTAGGAGACTTGGCTTGGAAAATAAACAAGTCAAGTTCTGGTTTCAGAATCGCCGAACCCAAATGAAGACTCAACTTGAAAGACACGAGAACATAATGCTTAGGCAGGAAAATGACAAGCTAAGAGGGGAGAATAGTATAATGAAAGATGCAATGGTAAATCCTATATGTAACAACTGTGGTGGACCTGCAATTCCCGGCCAGATTTTGTTTGAAGAGCACCAGATTAGAATCGAAAATGCCCGTCTAAAGGATGAATTGAATCGTATATGTGCTTTGACAAACAAGTTCCTCGGTAAACCAATATCTTCATTGGCTAATCCCATGGCACTATCGGCTTCAAATTCAGGTCTGGAACTTGGTATTGGAAGGAATGGTTATGGCGGTGGTTCGAGCTCTCTTGGCCCTTCTTTACCTATGGGGCTTGATCTCGGAGATTGTTCAGCAATGCCTGGTATTAGATCACCCATGGGAATGATGGGAAATAGTAATGACATTCAGCTTGAGAGATCAGTGCTTATAGATCTTGCATTAGCTGCCATGGATGAATTATTGAAAATGGCTCAGACAGATAGTGCTATTTGGATTAAGGGTTTGGATGGAGAGAGGGACATTTTGAATCAAGAAGAGTATGCAAGGTTTTCTTCTTGCATTGGTCCGAAACCTCCTGGTTTTGTCGCCGAAGCTACGAGAGAAACCGGCATAGTAATAATCAACAGTTCAGCCCTTTTGGAAACTTTGATGGACGCAAATCGATACGCAGACATGTTTCAGTCTATGATTGCTAGATCCGTAAACCTTGATGTTTTATCGGGTGGAATTGGTGGAACCAGAAATGGTGCTATACATTTGATGCATGCCGAGGTTCAATTGCTTTCACCATTAGTCCCGGTTCGTCAAGTGAGAATACTTCGCTTCTGTAAGCAACACGCAGAAGGTGTATGGGCCGTGGTTGATGTTTCCGTTGAGATCGGTCATGATGCTAATTCTCAACCATTTATGAGCTGTAGGAGACTTCCTTCGGGATGTATTGTTCAGGATATGCCAAATGGTTACTCCAAGGTAACTTGGATTGAGCATTGGGAGTATGATGAGAGTGTTGTTCATCAACTCTATCGTCCGTTGCTTATTTCCGGTATTGGTTTCGGTGCTCATAGATGGATTGCCACTCTCCAAAGACAGTGTGAAGGTTTGGCCATCCTTTTGTCGTCGTCCATCTCAAGTGACGATCACACAGCACTGAGCCAAGCTGGTAGAAGAAGCATGTTGAAGCTGGCACAACGCATGACGAATAATTTTTGTTCCGGGGTTTGTGCTTCATCTGCGAGGAAGTGGGACAGCCTTCAAATGGGGACTCTGAGTGACGACATGAGAGTTATGACTAGGAAAAACATTGATGACCCTGGCGAGCCTCCCGGTATTGTGCTCAGCGCTGCAACGTCTGTTTGGATGCCTGTTTCACGACAAAGACTGTTTGATTTTCTGCGTGATGAACGGCTTCGAAGCGAGTGGGACATTTTGTCAAACGGTGGACCCATGCAAGAAATGGTTCACATTGCTAAAGGTCAAGGACAAGGAAATTGTGTTTCTCTCCTTCGTGCTAACGCTGTTAATGCTAACGATAGCAGCATGTTGATTCTGCAAGAGACATGGATGGACACATCGTGTTCCGTGGTAGTGTACGCACCGGTTGACGCACAATCATTGAACGTGGTAATGAGCGGTGGAGATTCTGCATACGTTGCGCTCTTGCCTTCAGGCTTTGCCATTGTTCCTGATGGTAATAACTCCTCAAGCTATGGTGCATCAAATGAGACTTCACAAAAAGGCGGTGGAGGCGACAATGGTGGAAGTTTGCTAACCGTCGGGTTCCAAATTCTGGTGAATAGTCTTCCAACTGCGAAACTCACAATGGAATCAGTTGATACCGTGAATAATCTCATCGCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA 2253 0.4474 MEGRGEIGLTGDGLETSMIGRMRDDEYESRSGSDNFELEGISGDEQDGGDDQRKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRGENSIMKDAMVNPICNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLANPMALSASNSGLELGIGRNGYGGGSSSLGPSLPMGLDLGDCSAMPGIRSPMGMMGNSNDIQLERSVLIDLALAAMDELLKMAQTDSAIWIKGLDGERDILNQEEYARFSSCIGPKPPGFVAEATRETGIVIINSSALLETLMDANRYADMFQSMIARSVNLDVLSGGIGGTRNGAIHLMHAEVQLLSPLVPVRQVRILRFCKQHAEGVWAVVDVSVEIGHDANSQPFMSCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLLISGIGFGAHRWIATLQRQCEGLAILLSSSISSDDHTALSQAGRRSMLKLAQRMTNNFCSGVCASSARKWDSLQMGTLSDDMRVMTRKNIDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAIVPDGNNSSSYGASNETSQKGGGGDNGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLIACTIQKIKAALRVA* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4592 750 MobiDBLite consensus disorder prediction 18 33 - -
Psa6g4592 750 SUPERFAMILY Bet v1-like 257 485 - -
Psa6g4592 750 SMART HOX_1 54 117 IPR001356 GO:0003677
Psa6g4592 750 Gene3D - 43 128 - -
Psa6g4592 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 748 IPR042160 -
Psa6g4592 750 CDD START_ArGLABRA2_like 258 484 - -
Psa6g4592 750 Pfam START domain 264 484 IPR002913 GO:0008289
Psa6g4592 750 SUPERFAMILY Homeodomain-like 44 113 IPR009057 -
Psa6g4592 750 MobiDBLite consensus disorder prediction 1 65 - -
Psa6g4592 750 Coils Coil 107 127 - -
Psa6g4592 750 CDD homeodomain 55 113 IPR001356 GO:0003677
Psa6g4592 750 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Psa6g4592 750 ProSiteProfiles START domain profile. 254 488 IPR002913 GO:0008289
Psa6g4592 750 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Psa6g4592 750 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 748 - -
Psa6g4592 750 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Psa6g4592 750 SMART START_1 263 485 IPR002913 GO:0008289
Psa6g4592 750 SUPERFAMILY Bet v1-like 512 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4592 Psa-Chr6 399271352 399278124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4592 1 747 Homeobox Transcription Factor Family AT3G61150 60.526 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa6g4592 START 6.7e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4592 K09338 - gmx:100794400 1214.52