Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4578 ATGCTTCTAGTTTCTTCTTTTTCTTCCATTAATATTAGTATTTACTTATTCTCTTCTGTACCTCCTTGCGAAACTTCTAGAACCATTACTACAGAAAACAAGAATTCGTTCTCTCGTGTTATTTTCTTCTCCATGGGTCCATCGGCGGAACACAATGGAGACTCCTCAACCGGCGAGTCTCAAAGATCAACTCCGACACCGTTTATTACCAAGACGTACCAGATCGTTGATGATCGCACCATCGACGACGTCGTTTCATGGAACGATACCGGAACATCCTTCGTCGTTTGGAATCCTACCGTTTTCGCGAGGGATTTGCTTCCTAAATATTTCAAGCACAATAATTTCTCCAGCTTCGTACGCCAACTCAATACTTATGGATTTAAAAAAGTTGTGGCTGATCGCTGGGAATTCTCTAACGAATGCTTTCGAAGAGGCGAGAAACGCCTTTTATGTGATATTCAGCGACGGAAAATCGTTTCAAAATCGCCGCCGGCAGTTATCAATGGCGGTGCAACTGCAACAGTGGTGTCGTCTCCGTTGCAATCGGTTTTGACTGCAAATCCGATCGTATCGCCGTCAATTTCGGGAGAGGAGCAGGTGGTGTCTTCGGATTCGTCGCCATTAGAGCAGGCGGCCCTATTAGAAGAGAACCAGAGGCTTAGAAAGGAGAACATGCAATTAACGACGGAAATAGATGAAATGAAATCCCTCTTCAATAATATATTCAATCTTATGTCTAATTATGCGAAATTTCAAGCGGAAAGTGGTGCACATGGAAAAGAGGCAACGAAGACGCTTAATTTGTTGCCGGAGAAGCGGTACGATGGAGAAGATACGGCGGCGATGGTGGTGGATGATAATTACCCGCAGCTGTTTGGGGTGGCGATAGGTAGGAAGCGAGCAAGAGAAGAAGGGAAGTGTGTTGAGTAG 933 0.4491 MLLVSSFSSINISIYLFSSVPPCETSRTITTENKNSFSRVIFFSMGPSAEHNGDSSTGESQRSTPTPFITKTYQIVDDRTIDDVVSWNDTGTSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVADRWEFSNECFRRGEKRLLCDIQRRKIVSKSPPAVINGGATATVVSSPLQSVLTANPIVSPSISGEEQVVSSDSSPLEQAALLEENQRLRKENMQLTTEIDEMKSLFNNIFNLMSNYAKFQAESGAHGKEATKTLNLLPEKRYDGEDTAAMVVDDNYPQLFGVAIGRKRAREEGKCVE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4578 310 Gene3D - 60 158 IPR036388 -
Psa6g4578 310 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 50 304 IPR027725 -
Psa6g4578 310 Pfam HSF-type DNA-binding 68 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 50 304 - -
Psa6g4578 310 Coils Coil 211 238 - -
Psa6g4578 310 SMART hsfneu3 64 157 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 PRINTS Heat shock factor (HSF) domain signature 68 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 PRINTS Heat shock factor (HSF) domain signature 106 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 PRINTS Heat shock factor (HSF) domain signature 119 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 ProSitePatterns HSF-type DNA-binding domain signature. 107 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4578 310 SUPERFAMILY "Winged helix" DNA-binding domain 64 157 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4578 Psa-Chr6 398245880 398247456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4578 57 310 HSF AT5G62020 50.000 9.80e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g4578 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4578 K09419 - mnt:21398843 325.479