Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4572 ATGAAAGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAATCTGAGCTGGAGCGGCTTTTTAGACGATATGGCAAGGTCGATAGGGTGGATATGAAAGCTGGATTTGCTTTTATTTATATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGTGCTCTCGATCGGATAGAATTTGGTCGGAAGGGGCGTAGACTCCGTGTAGAATGGACAAAGCAAGAACGTGGCATTCGAAGGCCTGCTGAGCGCCCAAAAAGATCTTCAGCTAATGCGAGACCATCAAAGACCCTATTTGTAATTAATTTTGATACAAACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGGAGGAATTTTGCATTTGTTCAGTATGAATCAGAAGATGATGCTTCCAAAGCCCTGGAAGCTACAAATATGAGCAAGTTGTTGGATCGGGTTATTTCAGTTGAATTTGCTGCCAAAGACGACGATGTCAGGCGAAATGGACATAGCCCGGAGAGAGGCCGTGATCGTCAGCGTGACAGAAGCCTTGATGGAAGGCGATCGCCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTACGGCCATGGGTCTAGTCCATATAAGAGGCAGAGGAGCAGCCCTGATTATGGGCATGGCAACAGCCGTAGTAGAAGCCCCTATCGAAGAGAGCGAGGTAGCCCTGTTTACGGGCGTCGAAGCATTAGTCCCTACAGAAGAGAGAGGGATGATTCTGTGCCTGTTCATGTCAACAGCCGCAGTCCTTATCACAAAGAGCGGGGGAGAACCAACCGGTCTCCCTCCCATAGTCTCGAAGAAGGAGAGACTCAAAAAGGTCATGGATCTGACCTTAGTCCAGAAGAAGGGGAGAGGATAGACCCTAAAAAAGGTCCTAGGTTTGGCCATAGTCCCGAAGAGGGAGAGAGGATAGATCCTAGAAAAGGTCATGAATCTGACCATAGTCCTTATGTTGCTGTGAAGGGTAGCCCTGAAAATGGCCATTACCAGAGGCACAGTCCTGACACAATACGGAACCCCAGCCCTTACAAGGATTCTAGAGGGAGTCCTAGGCCTGATGCAAAAGGGAACCCCGGCCCATGCAATGATTATGGAGGGAGCCCAAATACTATGCCTGAACCCAGAGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAACAAAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1263 0.4846 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDADAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPKRSSANARPSKTLFVINFDTNHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSPYKRQRSSPDYGHGNSRSRSPYRRERGSPVYGRRSISPYRRERDDSVPVHVNSRSPYHKERGRTNRSPSHSLEEGETQKGHGSDLSPEEGERIDPKKGPRFGHSPEEGERIDPRKGHESDHSPYVAVKGSPENGHYQRHSPDTIRNPSPYKDSRGSPRPDAKGNPGPCNDYGGSPNTMPEPRDSPNYGGPESPMHEQSQSQSPPAEE* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4572 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Psa6g4572 420 SMART rrm1_1 97 163 IPR000504 GO:0003723
Psa6g4572 420 SMART rrm1_1 3 70 IPR000504 GO:0003723
Psa6g4572 420 MobiDBLite consensus disorder prediction 230 335 - -
Psa6g4572 420 MobiDBLite consensus disorder prediction 214 228 - -
Psa6g4572 420 MobiDBLite consensus disorder prediction 170 207 - -
Psa6g4572 420 PANTHER BNAC08G47240D PROTEIN 4 212 - -
Psa6g4572 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Psa6g4572 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Psa6g4572 420 MobiDBLite consensus disorder prediction 404 420 - -
Psa6g4572 420 Gene3D - 85 180 IPR012677 -
Psa6g4572 420 Gene3D - 1 84 IPR012677 -
Psa6g4572 420 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 212 - -
Psa6g4572 420 MobiDBLite consensus disorder prediction 170 420 - -
Psa6g4572 420 MobiDBLite consensus disorder prediction 349 363 - -
Psa6g4572 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Psa6g4572 420 SUPERFAMILY RNA-binding domain, RBD 3 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4572 Psa-Chr6 397966194 397971284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4572 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 22.222 2.00e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4572 K12893 - gmx:100796509 567.77