Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4568 ATGGAGGAATTAAGGGTTTATTGTCTCCATACAAAAATGACACACTCAGATTTGAGTCCCATTTTCATCTTCGTCCTCCTCCTTATTTCTTACCATCATCACTACAGTACTGCAGAATCACAACCGGAAAAACAACCATTGTATCCTTACAGATCTCCAACAACTTTATGGCACGTGCCGTCTGTTGGTGTAATTGTTGGAGTCATCATTGCAGCAATTTTCTTAGTTTTCATCTTCTTGTTGTTACTGGGCTACTACTTATTGTCGGAGTCATCAAAATGTGAATCTGCCATTGGTATTGATCCTCAACTTCTCGAAACTTTCCCAATTTTATTGTACTCTTCCATCATGAAACATGTTAAGGAAGGCGATGAAGGTCCTTTACCATGTGCTGTGTGTCTCGCTGACTTCGATGACAATGACACCGTTCGTGTGTTATCTCCTTGTAGTCATTTCTTTCATCCTCCATGTATTGATGCTTGGCTTTCTACCCATGACACTTGTCCTGTTTGTCGTAGCAACCTCAATTGTGGCGGTGGAATTGAAACTGTGTAA 555 0.4072 MEELRVYCLHTKMTHSDLSPIFIFVLLLISYHHHYSTAESQPEKQPLYPYRSPTTLWHVPSVGVIVGVIIAAIFLVFIFLLLLGYYLLSESSKCESAIGIDPQLLETFPILLYSSIMKHVKEGDEGPLPCAVCLADFDDNDTVRVLSPCSHFFHPPCIDAWLSTHDTCPVCRSNLNCGGGIETV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4568 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 177 IPR013083 -
Psa6g4568 184 SMART ring_2 130 171 IPR001841 -
Psa6g4568 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 22 176 - -
Psa6g4568 184 CDD RING-H2_PA-TM-RING 130 172 - -
Psa6g4568 184 PANTHER RING FINGER DOMAIN-CONTAINING 22 176 - -
Psa6g4568 184 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Psa6g4568 184 SUPERFAMILY RING/U-box 129 176 - -
Psa6g4568 184 Pfam Ring finger domain 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4568 Psa-Chr6 397515962 397516814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4568 13 175 Rapid Response to Elicitors AT3G05200 38.068 2.16e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4568 K10664 - pda:103723164 106.686