Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4562 ATGGTGTTGCAGACACTAGAAAAGACAAAACCAAAACATAGGAAGGGTTTGTGGTCACCTGAAGAAGATCATAAACTCAGAAACTACATCCTTAAACATGGTCATGGCTGTTGGAGTTCTGTCCCTATTAAGTCAGGCTTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTTAGCAAGCAAGAGGAGGAGACAATCTTGACCCTTCATCATATGTTAGGCAACAAGTGGTCACAAATAGCACAACATTTACCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAAAGAGTGGCCAAAGCTAATGAAATGGAATCTCAAAAACAGTTTCAATATGCTAGCTCAAGCTCAGACACAATCAACTCTTCACACTCTCTTCAAAAACTTGCAACTCAAGATCCACACAATTACAACAACATCATCACCAAAGAGACTCAACAAAGCTCATTACCAAAGCTTTTATTCGCCGAATGGCTTTCACTTGATCATGTAAATGGTAGTAACTCTTCAAATTCAGTTGAGTCTTTGGTCATGAGAAATGGATTTGATTCAAATTCAGGTTTTCAAGAAGCTGCAATGCATCATGATGTGTCGGAGTATCATAATAGTGTGATGTTCAACTCACAAGTTAAATTTGCTAACCAAATGATGGGAAATGGGTTTGTTCATTGCTTACCTGAGGTTGATTTGAGTAACAATTTCAATTTAAGCAATGATGCAATGTATGTTTAA 789 0.3714 MVLQTLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKSGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKANEMESQKQFQYASSSSDTINSSHSLQKLATQDPHNYNNIITKETQQSSLPKLLFAEWLSLDHVNGSNSSNSVESLVMRNGFDSNSGFQEAAMHHDVSEYHNSVMFNSQVKFANQMMGNGFVHCLPEVDLSNNFNLSNDAMYV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4562 262 Gene3D - 69 142 - -
Psa6g4562 262 CDD SANT 18 62 IPR001005 -
Psa6g4562 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Psa6g4562 262 PANTHER MYB DOMAIN PROTEIN 55 1 255 - -
Psa6g4562 262 SMART sant 67 115 IPR001005 -
Psa6g4562 262 SMART sant 14 64 IPR001005 -
Psa6g4562 262 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Psa6g4562 262 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Psa6g4562 262 Gene3D - 15 67 - -
Psa6g4562 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa6g4562 262 PANTHER MYB TRANSCRIPTION FACTOR 1 255 - -
Psa6g4562 262 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Psa6g4562 262 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Psa6g4562 262 CDD SANT 70 113 IPR001005 -
Psa6g4562 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4562 Psa-Chr6 397181669 397183821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4562 8 206 MYB Transcription Factor Family AT3G48920 53.431 8.18e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g4562 Myb_DNA-binding 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4562 K09422 - gmx:778167 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4562 6 397181669 397183821 Psa6g4562 6 397181669 397183821 ECH