Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4560 ATGGGTAAAGCTCCTTGTTGTGACAAACATGGAGTGAGAAGAGGAGCTTGGACTCCTGAAGAAGATCAAGCTTTGGCTGACTATATCAACAAACATGGCCATGGAAGTTGGCGTACACTTCCTAAGCATGCAGGTCTCTTAAGATGTGGAAAAAGTTGTCGGCTTCGATGGATAAACTATCTTCGTCCTGGCATCAAGCGTGGCCCGTTTACGAATGAAGAAGAAACTACTATTATTCAACTTCATGCCATGCTTGGCAACAGGTGGGCTGCTATAGCATCTCAGCTACCCGGAAGAACAGACAACGAGATTAAGAACTACTGGAACACGCATCTAAAGAAGCGTGTCCCTCGGTCACTAGGGGAAAAACATCCATGTCTTATTTCTGATAGGAATGTCCAGTCGAATGCTCCTTCTACGCGCCACATGGTACAATGGGAAAGTGCGAGGGTTGAGGCAGAGACAAGGTTGTCGGTTGAATCCACATTGCACAATTCAGGCTCTACGACGGAAACATGTCCGGATTACTTTCTTAAACTTTGGAATTCTGATGTTGGTCAGTCCTTCCGTATGATCAAGGGAAAGGAGGAACTGGTGTCCCAAAGTTTAGTCTCACAAGCATCTGCTTCATCACCATCATCGGCAAAGTTAGACGAGTCATGTTCAGATGTCTCGTCGCAGGTAAAAAACACTCAAAGCCTTACTAAATTGTCAACAACACCAAAGCTTGAAGTTGACAACATGAATCAGGAACAAAACACGTCTCACGAACAAACAATAAGTAGCTATAAACCAAAGCTTGGAGACGATAGAGCTGGTTCAGATTCAGGAAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTGTTACATATGCCTGATGATATTGAATTCTTGGGACACACTGACAATTTCTTGAATCTCCTCGATGGTAGATATGACTAA 954 0.434 MGKAPCCDKHGVRRGAWTPEEDQALADYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTNEEETTIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKRVPRSLGEKHPCLISDRNVQSNAPSTRHMVQWESARVEAETRLSVESTLHNSGSTTETCPDYFLKLWNSDVGQSFRMIKGKEELVSQSLVSQASASSPSSAKLDESCSDVSSQVKNTQSLTKLSTTPKLEVDNMNQEQNTSHEQTISSYKPKLGDDRAGSDSGNYEFLDTSDSALKHLLHMPDDIEFLGHTDNFLNLLDGRYD* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4560 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa6g4560 317 CDD SANT 69 112 IPR001005 -
Psa6g4560 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa6g4560 317 MobiDBLite consensus disorder prediction 206 225 - -
Psa6g4560 317 SMART sant 13 63 IPR001005 -
Psa6g4560 317 SMART sant 66 114 IPR001005 -
Psa6g4560 317 CDD SANT 16 61 IPR001005 -
Psa6g4560 317 Gene3D - 69 116 - -
Psa6g4560 317 MobiDBLite consensus disorder prediction 246 262 - -
Psa6g4560 317 MobiDBLite consensus disorder prediction 246 274 - -
Psa6g4560 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa6g4560 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 305 - -
Psa6g4560 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa6g4560 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa6g4560 317 Gene3D - 14 66 - -
Psa6g4560 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa6g4560 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa6g4560 317 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4560 Psa-Chr6 397148257 397149884 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4560 1 211 MYB Transcription Factor Family AT3G61250 60.538 1.20e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g4560 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4560 K09422 - gmx:100782075 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4560 6 397148257 397149884 Psa6g4560 6 397148257 397149884 ECH