Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4548 ATGGGCTTTCTCCGGCGACTCTTTGCCGCCAAAAAACCGTGTCCTCCTCCCGCTGACGGCTCAGGTACCAAATCTGACAAAGACAACAACACCAAGAAAAGATGGACCTTCGCCAAACAGAGCAGCAGGAGAAAGTCACTCCCACCGCCACAACCGCCACCATCCTCCGCCTTCACCCAATTTGACCCCTCCACTTCTTTAGAACGGAACAAACATGCAATTGCCGTTGCTGCCGCTACTGCAGCCGTCGCCGAGGCCGCTCTCGCCACCGCACATGCCGCTGCGGAGGTTGTCAGACTGACAAGCAACGGCGTGGGGAGTAGCTCCAAAGCACGTACTGGCCAGACACGGTTGCCGGAGGAAACCGCCGCCGTTAGAATTCAATCAGCTTTCCGCGGTTATTTGGCGAGGAGGGCGTTGAGAGCACTAAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGTCATATTGTGAGAAAGCAAAGTGCGGATATGCTAAGGCGCATGCAAACATTGGTGCGACTTCAGACGCAGGCACGTGCGACTCGCGCGCACCACTTGTCTTCGGATAATTTGCATTCTTTCAAGTCTTCACTTTGTCATTACCCTGTCCCCGAAGAATATGAGGACCCGCACTCACATCGTGTCTGTAGTACGAAATTCGGTGGATCTTCCATCCTTAAGAGATGTAGTTCCAATGCAAATTTTAGGAAGATTGAGTCGGAGAGACAAAGGTTTGGCTCCAATTGGTTAGACCATTGGATGCAAGATAACTCCGGTAACCAAATCAAAGATACTTCATTCAAGCATAAACATTCTCATGACGATAAAATCGATAAGATTCTCGAAGTAGATACATGGAAGCCACACGAGTCCCCATCGAAACATTCAACAAAACCTCAAAACCAAAGTCCCTCATTCAAGTTTCACAAAGGAAAAGACCAAGAAACAGCATCACGCACGGCTGATAATAGTCCACAAACATTCTCCGCGTCTTCAAAAACCGGAAACAGTGTAAGAAGAGGCACTCCTTTTACACCTACAAGAAGTGAATGTTCATGGAGTTTCTTAGGTGGTTACTCCGGTTACCCTAATTTCATGGCGAACACCGAATCCTCAAGGGCTAAAGTTCGATCGCAAAGTGCACCAAGACAAAGGCATGAGTTTGAGGGATACATTTCCTCTAGAAGACCTTTTCAAGGTCTTTGGGAAGTAGGGTCTACAAATTCAGACCAAGATTCTGATTCAAGGAGCAATAGAGTCTCACCTTCTTTGAGCCGTTTCAATAGAATTGGAAGTAACAATTTAAGGTGA 1314 0.4772 MGFLRRLFAAKKPCPPPADGSGTKSDKDNNTKKRWTFAKQSSRRKSLPPPQPPPSSAFTQFDPSTSLERNKHAIAVAAATAAVAEAALATAHAAAEVVRLTSNGVGSSSKARTGQTRLPEETAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQTQARATRAHHLSSDNLHSFKSSLCHYPVPEEYEDPHSHRVCSTKFGGSSILKRCSSNANFRKIESERQRFGSNWLDHWMQDNSGNQIKDTSFKHKHSHDDKIDKILEVDTWKPHESPSKHSTKPQNQSPSFKFHKGKDQETASRTADNSPQTFSASSKTGNSVRRGTPFTPTRSECSWSFLGGYSGYPNFMANTESSRAKVRSQSAPRQRHEFEGYISSRRPFQGLWEVGSTNSDQDSDSRSNRVSPSLSRFNRIGSNNLR* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4548 437 MobiDBLite consensus disorder prediction 403 437 - -
Psa6g4548 437 Pfam IQ calmodulin-binding motif 123 141 IPR000048 GO:0005515
Psa6g4548 437 Pfam IQ calmodulin-binding motif 144 161 IPR000048 GO:0005515
Psa6g4548 437 MobiDBLite consensus disorder prediction 319 346 - -
Psa6g4548 437 PANTHER IQ-DOMAIN 5-RELATED 290 435 - -
Psa6g4548 437 PANTHER IQ-DOMAIN 5-RELATED 1 297 - -
Psa6g4548 437 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Psa6g4548 437 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Psa6g4548 437 PANTHER CALMODULIN-BINDING PROTEIN 1 297 - -
Psa6g4548 437 PANTHER CALMODULIN-BINDING PROTEIN 290 435 - -
Psa6g4548 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 165 IPR027417 -
Psa6g4548 437 MobiDBLite consensus disorder prediction 289 346 - -
Psa6g4548 437 MobiDBLite consensus disorder prediction 374 393 - -
Psa6g4548 437 MobiDBLite consensus disorder prediction 9 58 - -
Psa6g4548 437 Gene3D - 119 172 - -
Psa6g4548 437 Pfam Protein of unknown function (DUF4005) 325 390 IPR025064 -
Psa6g4548 437 SMART iq_5 142 163 IPR000048 GO:0005515
Psa6g4548 437 SMART iq_5 119 141 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4548 Psa-Chr6 396490127 396494045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4548 1 415 IQD Protein Family AT5G62070 45.012 1.74e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4548 - - gmx:100783694 434.491