Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4543 ATGGCTCCATCGGCGGAACACAATGGCGACTCCTCAACCGGCGACTTTCAAAAATCAACTCCGACAGCGTTCATCACCAAGACGTACCAGCTCGTTGATGACAGCGCCTTCGACGACGTGGTTTCATGGAACGATGCTGGAACATCCTTCGTCGTATGGAACCCTACCGTTTTCGCCACGGATTTGCTTCCTAAATATTTCAAACACAATAACTTCTCCAGCTTTGTCCGTCAACTCAATACTTACGGATTTAAAAAAGTTGTGTCTGATCGCTGGGAATTCTCTTACGAATTCTTTCGAAGGGGGGAGAAACACCTTCTATGTGATATTCATCGACGAAAAGTCGTATCAAAATTGCCGTCTTCAGTTTCCAATGGCGGTGCATCTGCAACACTAGCGGTGTCGCCTCCTTTGCATTCAGTTCCATTTCCGACGGTAAAGCCAATCGTATCGCCGTCAATTTCGGGAGAGGAGCAGGTGATTTCTTCCGATTCGTCGCCGATTGAGCAGGCGGCGCTATTAGAAGAGAACGAGAGGCTGAGAAAGGAGAACATGCAGTTAAGGACGGAAGTAAAGGACATGAAATCACTCTTCAATAATATTTTCAATCTTATGTCTAATCATGCGAAATGTCAAGCGGAAAGTGGTGCACAAGGAAAGGAGTGTTGCTCCACGGCAAATAAGACGCTTCATCCATTGCCGGAGAAGGAGAAGCGGTGCGATGGCGAAGATGCGGCGGAGATGGTTGTGGAGGATAATTACCCGAAGCTGTTTGGCGTGGCGATAGGTACGAAGCGAGCGAGAGAAGAAGGAAGGGGTGATGAAGATAATACGGTGTTGAGCCTGCATCAACCAGTTCACGTGGACTGGAATCAGAGTCGTTAG 885 0.4802 MAPSAEHNGDSSTGDFQKSTPTAFITKTYQLVDDSAFDDVVSWNDAGTSFVVWNPTVFATDLLPKYFKHNNFSSFVRQLNTYGFKKVVSDRWEFSYEFFRRGEKHLLCDIHRRKVVSKLPSSVSNGGASATLAVSPPLHSVPFPTVKPIVSPSISGEEQVISSDSSPIEQAALLEENERLRKENMQLRTEVKDMKSLFNNIFNLMSNHAKCQAESGAQGKECCSTANKTLHPLPEKEKRCDGEDAAEMVVEDNYPKLFGVAIGTKRAREEGRGDEDNTVLSLHQPVHVDWNQSR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4543 294 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 272 IPR027725 -
Psa6g4543 294 Gene3D - 15 114 IPR036388 -
Psa6g4543 294 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4543 294 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4543 294 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4543 294 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Psa6g4543 294 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4543 294 CDD bZIP 169 196 - -
Psa6g4543 294 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 11 272 - -
Psa6g4543 294 Coils Coil 170 197 - -
Psa6g4543 294 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g4543 294 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4543 Psa-Chr6 396139826 396141107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4543 15 268 HSF AT4G11660 45.804 2.95e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g4543 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4543 K09419 - gmx:100780987 328.946