Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4505 ATGTCAGAATCTGAGGAAGAAAATCAAGATTTTCCTCCCAAAACAAAAACATCATTAGAAGAACATGGTTGTGCTATGGATTTTGATCTGGATTTAGAAACTTCATGGCCTTTGGATCACATGTCTTTTATCTCAAACCCTATGTCACCTTTTCTGTTTTCCACCATCTCTGATCAACCTTCCTCTCCTCTATGGGTTTTTAGTGATGGAGAAGATGACAAACATGCCAAGCTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCGAATTCAATAACTGAGAAGCCAGTCGAGAACGATGACATCAAAACATTTTTGCCACCGCTGATGCCACCAATAGAAAATTTGGATGGATATTGTGCAATCAAGGAAAAGATGACACAAGCGCTTCGCTACTTCAAAGAATGGACAGAACTGAATATTCTGGCTCAGGTTTGGGCGCCGGTGAGGAATGGTAATCGGTATGAACTTACAACTTCAGGTCAACCCTTTGTGCTTGATCCGCATAGTAATGGACTCAATCAGTATAGAACAGCTTCCCTGATGTACAAGTTTTCGGTGGATGGAGAGAATGATGGAACTCTAGGACTTCCTGGTCGAGTCTTCCAGCAGAAACTACCGGAATGGTCACCTAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGTCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCGTTGCAGTCGTGTATCGGTGTGATAGAGTTGATTATGACTTCACTGAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCGTTATCCGAGATCTTGGAGATATTGACAGTTGTGTGTGAAACTCATAATTTACCTCTCGCGCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCGAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGAGGTAGCAGCCTATATTATAGATGCTCGTTTATGGGGTTTTCGAGAGGCGTGTGTCGAACATCACTTGCAACATGGTCAAGGTGTTGCTGGAAGGGCTTTTTTGTCCCAAAACATGAGCTTCTGCACAAACATTACAAAATTCTGCAAAACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAGCAGGCTCTTTTGCAATCTGTTTGCGGAGTTTTCATACGGGAAATGACGATTATGTATTAGAGTTTTTTCTGCCTCCTGCAATCACCGAATTTCATGAACAGAAGACACTCTTGGGATCTATATTGGCAACAATGAAACAGCATTTTCAGAGTCTTAGTATTGCTGTTGGCGTTGAACTTGAGGAAAATGGTCCAGTTGAAATTATTGAAGCAACAGATGAAGGCATCCGTCTTAGAATCGAATCTATTCCAATTGCTCAATCTATTAAATCACCACCTATACCCGATGCCTCGCCAAATATGGAGGAGGAGGAGGAGTTACCGCGTGATCCATTAGAGATTCATGGTGAAAATGTTGGAAGCATTGATCCGGTGTCCTCTTTAGGGAATAAAAACATAAAGAAACCCTCAGAGAGAAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTACAACGTTACTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGTCCTACTACAATGAAGCGCATATGCAGGCAGCATGGGATATCCCGTTGGCCGTCTCGAAAGATCAACAAGGTTAACCGTTCGCTGTCAAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGGGCTGAAGGGACGTTTGATTTGAATTCTCTCAACGCTAATCAACTTCCTGTTGCTGGTTCTTTTCTCGACCCTTCTACTCCGAACAAGTCCAGCCAGCAAGCTTCATTAAACATTAGATCATCAGAGCCTCAGATGAAAGAGAATGAACTTTATACCCCTAAAGAAACAAACATACCAATTGTATTGGAAGATCAATTGCTTGAAGGAAGAAAACATGGTCTTGGCAAGGACCGAAAAAGGACTCGAAGTAGGAGTATCTCGAGTGAAGATAGCATAAATCCTACTTCTCATGGTTCGTGCCATGATAGTCCCCAGGATGAAATTCCAACAGTAAAAGATCCATTCATTCCATCCAATAATGATCAATATGTTGTGTTGAGGGGATCGCCGGAGTCGAGAGTGCAGCCAACTAATGCATTCAACTCGCCAACTGCTCACCGTTTGCCCGACAATATCTTAGCAGAACTTCAAGAGCCGTTTGGAGGGATGCTAATAGAGGATGCAGGTAGTTCAAAAGACTTGAGAAACTTGTGTCCTTCCGTAGCTGAGGCCATTTTGGAGGATATAGCTCCAGAACCTTATGGGAATAACCTTCCATGTTCATATCTGGCTCCTAAACAATGCATGGAAGCTACTAATAAATCGGTGACGCCTTTCGCAGCTAGAAAAGAAATGAAAACTGTGACTATCAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTGAAAGAGGAAGTTGCCAAAAGACTGAAACTTGAGATAGGTACATTTGATGTCAAGTACATGGATGATGATAATGAATGGGTTTTGATTGCCTGTGATGCAGACCTGCAGGAGTGTATGTATGTTTCAAGATCATCGGGTGAAAGCAAGATAATCCGGGTTTTGGTGCATGACGTATCGTCGAATCTCGGAAGCTCCTGGGAGAGTTCGGGGGAGTGA 2886 0.4245 MSESEEENQDFPPKTKTSLEEHGCAMDFDLDLETSWPLDHMSFISNPMSPFLFSTISDQPSSPLWVFSDGEDDKHAKLAASAFSDCHKIFSCDSNSITEKPVENDDIKTFLPPLMPPIENLDGYCAIKEKMTQALRYFKEWTELNILAQVWAPVRNGNRYELTTSGQPFVLDPHSNGLNQYRTASLMYKFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEILDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEVAAYIIDARLWGFREACVEHHLQHGQGVAGRAFLSQNMSFCTNITKFCKTDYPLVHYALMFGLAGSFAICLRSFHTGNDDYVLEFFLPPAITEFHEQKTLLGSILATMKQHFQSLSIAVGVELEENGPVEIIEATDEGIRLRIESIPIAQSIKSPPIPDASPNMEEEEELPRDPLEIHGENVGSIDPVSSLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGTFDLNSLNANQLPVAGSFLDPSTPNKSSQQASLNIRSSEPQMKENELYTPKETNIPIVLEDQLLEGRKHGLGKDRKRTRSRSISSEDSINPTSHGSCHDSPQDEIPTVKDPFIPSNNDQYVVLRGSPESRVQPTNAFNSPTAHRLPDNILAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDIAPEPYGNNLPCSYLAPKQCMEATNKSVTPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVAKRLKLEIGTFDVKYMDDDNEWVLIACDADLQECMYVSRSSGESKIIRVLVHDVSSNLGSSWESSGE* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4505 961 MobiDBLite consensus disorder prediction 660 689 - -
Psa6g4505 961 MobiDBLite consensus disorder prediction 709 724 - -
Psa6g4505 961 Pfam PB1 domain 865 947 IPR000270 GO:0005515
Psa6g4505 961 MobiDBLite consensus disorder prediction 660 691 - -
Psa6g4505 961 SUPERFAMILY CAD & PB1 domains 863 952 - -
Psa6g4505 961 SMART PB1_new 865 948 IPR000270 GO:0005515
Psa6g4505 961 MobiDBLite consensus disorder prediction 709 743 - -
Psa6g4505 961 PANTHER PROTEIN NLP8 3 960 IPR045012 GO:0003700
Psa6g4505 961 CDD PB1_NLP 866 947 IPR034891 -
Psa6g4505 961 ProSiteProfiles RWP-RK domain profile. 561 642 IPR003035 -
Psa6g4505 961 MobiDBLite consensus disorder prediction 725 741 - -
Psa6g4505 961 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 960 - -
Psa6g4505 961 MobiDBLite consensus disorder prediction 516 535 - -
Psa6g4505 961 ProSiteProfiles PB1 domain profile. 865 948 IPR000270 GO:0005515
Psa6g4505 961 Gene3D - 862 946 - -
Psa6g4505 961 Pfam RWP-RK domain 574 622 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4505 Psa-Chr6 393638157 393643047 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4505 261 961 NLP Transcription Factor Family AT4G24020 54.993 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Psa6g4505 PB1 6.7e-18 CL0072