Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4500 ATGGGTAGCATCCAAGAAGCAGTATCGGTTGCGGAAGAGCGAGCGAAGGATGTGGAAAACGACACCGTTTACGTTGCGGTGGGGAAGAACGTGAAGAAGAGCCAACGACTGTTGCATTGGGCAACTGAGAAATTCTCAGGGAAGAGAATTTGTCTTCTTCATATTCACCAACCCGATCCTCTGAATTCGTTGAATACAAATGTCTCTGAAATAGAACCTAAAGATGATGTAATCAAGGCATTCCGGGAGAATGATAGGCAAGCAGTGCATGAACTCCTAGACCAGTTCATCCTCACTCTGGTTCCAGAAGGGGTACATGCCTCTAAATTGTTGATTGATAAGGATAATATTGAGAAAGGGATCATAGAAGCTATTGCTCAACACAATATTAGGTGTCTTGTAATGGGAGCAGCTGCAGACAGACATAAGATGAGGTTAGATAGTGAAGACACACCTGTAATAGAGACTGCCCCTGTATTATTGATGCTCAACTCAAATATGAAAGCCAAACAATCCGAAAAAATTAAATCACAATTGATTCCGGATGTATTGAAATATTTAGATTCTGGTGATATGGAAGAGACTGAAGATGTCAATTCCCATTGTTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTATTGCAAAGACAAAGTTGACAGACTTGCTTATTCATGAGGACGATGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAGAGAAGAAGTCGAAGAACAATTGGCAAGGGAAAAGCAAGACGTACAAGAAATGAAGAATCAGCGAGATAAAATTGTATGTGAATTGGAAATGCTCGAAGACCAAATCTCAGCTCTTAGAAACCAATTGTTTGAGTCCGAGTGTTCAGCAACCGAGTTGGAAGAGAAGATTATATTAGCTGTGGATCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTGAGGATAGAACATGCAAATGCAGTTAGGAAGGTTGAAATGCTGAGAAAATTTGGAGAAGTGGATACTTCATCCTCTTATGTGGTAGAATTCCCTGCATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGTTGTGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGTCAGAACCAATTTGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTAAGACATCCAAACCTGTTAACACTAATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTATGAATACCTAAACAATGGTAGCCTTGAAAGTCATCTTGAATGCAAAGATAAGACTCCACTTCCATGGCAAATTCGAATGTCCATTGCTACTGACATATGCTCTGCTTTAATCTTCCTTCACTCAAGTGAGCCTTGTATTATCCATGGGAATCTGAAGCCTAGTAAGGTTCTGCTTGATGCTAATTTTGTTGCCAAACTTGGTGACTTGGGGATTCCTTCTTTAGTCCAGCATAGTGTGGATTCAGCTGACACTGGGACAGTAGTATGTAACAACTCACATAAAGATTTGGTGTATGTGGATCCAGAGTATCTTGATACTGGTAAACTTACACCGGAGTCAGATGTGTATTCATTTGGAATCATACTCTTACAACTTCTAACTGGAAGACCACTTTTGGGGCTAGTTAGAGACATGAAATGTGCCTTGGAAAAAGAAAATCTTAAAACTGTGTTGGACTTTTCAGCTGGGGAATGGCCACTTCATCAAACCACACAAATAGCATGTTTAGCATTAAGGTGTTGCGAGAAGACTTGGCTGAACCGGCCAGATCTTGTATCAGAAGTATGGAGTGTTCTTAAACCATTCAGAACTATTTGCATAAACAGAAGACAGGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCACTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCCTACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCTCCTATGACAAACCTCAAGCTTGAACATACAGATTTGGTACCTAATTATGCATTACACAATGCCATACGGGAGTGGCAGCAACAGTGA 2142 0.4071 MGSIQEAVSVAEERAKDVENDTVYVAVGKNVKKSQRLLHWATEKFSGKRICLLHIHQPDPLNSLNTNVSEIEPKDDVIKAFRENDRQAVHELLDQFILTLVPEGVHASKLLIDKDNIEKGIIEAIAQHNIRCLVMGAAADRHKMRLDSEDTPVIETAPVLLMLNSNMKAKQSEKIKSQLIPDVLKYLDSGDMEETEDVNSHCSLNAEWSFNSVIAKTKLTDLLIHEDDEALQNWRAKEISRREEVEEQLAREKQDVQEMKNQRDKIVCELEMLEDQISALRNQLFESECSATELEEKIILAVDLLISFKEKRDKLRIEHANAVRKVEMLRKFGEVDTSSSYVVEFPAFSFMEINEATHDFDQSWKIGEGSCGSVYKGLLRNMLVAIKMLPSYGCQNQFEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHLECKDKTPLPWQIRMSIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQHSVDSADTGTVVCNNSHKDLVYVDPEYLDTGKLTPESDVYSFGIILLQLLTGRPLLGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQIACLALRCCEKTWLNRPDLVSEVWSVLKPFRTICINRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAIREWQQQ* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4500 713 Pfam U-box domain 644 712 IPR003613 GO:0004842|GO:0016567
Psa6g4500 713 Gene3D HUPs 15 139 IPR014729 -
Psa6g4500 713 Coils Coil 235 297 - -
Psa6g4500 713 Gene3D Phosphorylase Kinase; domain 1 333 432 - -
Psa6g4500 713 ProSiteProfiles U-box domain profile. 643 713 IPR003613 GO:0004842|GO:0016567
Psa6g4500 713 SUPERFAMILY Protein kinase-like (PK-like) 336 614 IPR011009 -
Psa6g4500 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 713 IPR013083 -
Psa6g4500 713 Gene3D Transferase(Phosphotransferase) domain 1 433 628 - -
Psa6g4500 713 CDD RING-Ubox_WDSUB1_like 648 689 - -
Psa6g4500 713 Coils Coil 1 21 - -
Psa6g4500 713 SMART Ubox_2 647 710 IPR003613 GO:0004842|GO:0016567
Psa6g4500 713 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 138 - -
Psa6g4500 713 SUPERFAMILY RING/U-box 641 713 - -
Psa6g4500 713 CDD STK_N 22 158 - -
Psa6g4500 713 ProSiteProfiles Protein kinase domain profile. 360 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4500 713 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 16 148 - -
Psa6g4500 713 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 218 712 - -
Psa6g4500 713 PANTHER OS02G0152300 PROTEIN 16 148 - -
Psa6g4500 713 PANTHER OS02G0152300 PROTEIN 218 712 - -
Psa6g4500 713 Pfam Protein tyrosine and serine/threonine kinase 365 614 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4500 Psa-Chr6 393555269 393563481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4500 229 713 U-box Gene Family AT3G49060 50.205 2.00e-155 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa6g4500 PK_Tyr_Ser-Thr 6.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4500 - - mtr:MTR_1g100820 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4500 6 393555269 393563481 Psa6g4500 6 393555269 393563481 ECH