Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4466 ATGGATGAAGATTGGGATTTGTTTGCCATAGTTAGAAGTTGTCAACCAGCTACCAATAATACTACAAGCAATAGTTCTATGCCATCTTCTTCCACTTCTGATCTCAAGGTAGAATTAGAATATGATGCATTTTCTTTTCCCAATATAGTGCATCCTATAACCAATGAGATTCAAGAGCTAAACCAATTATTCACATCTTTTAACCCCACCAACACCACTACTACCACTAGTGCTCATGGTATCAATCCCTATTCCCCTACTCATATGGCAAAATGCATTGGACAGCAACAAAACCACCTTCCCCCTATTAATTCCTCTTCCATTTGGCCTAACTTTGTGCAAGAAGCCTCCACCTTCAACAAATTCCATAACCAACATAATCAAGTACAAACAATCCAGAAACAAGAATTTCAAGCACCACAAATCATCCAACCTCAAACACCAAGATCAAGAAAAAGAAAAAGTCAACAAGGGAAAATGGTGTGCCATGTAACCGCAGATAATCTCTCAGCAGATTTGTGGGCTTGGCGAAAATATGGGCAAAAACCTATTAAAGGTTCTCCATATCCAAGGAACTATTATAGATGTAGCAGTTCCAAAGGTTGTACTGCGCGAAAGCAAGTTGAAAGGAGTAACACTGAAGCAGACATGTTTATTGTGACGTATACGGGAGATCACAATCATCCAAAACCTACTCACCGGAACTCGCTCGCCGGAAGTACACGAACCAAGTCTCCGACGATACATCAACCCACTTCAATTTCTTGTCAAGCTAACAATGCAAATTCTTCTTCCTCGTCGTTAGGAGCTTCGGTTGAAGAAGAAGAGGATATGGAAGTGGAAATGGAAACTGATGAGGAAGGTGAAGAAGGTTGCGAATTGTGA 885 0.4056 MDEDWDLFAIVRSCQPATNNTTSNSSMPSSSTSDLKVELEYDAFSFPNIVHPITNEIQELNQLFTSFNPTNTTTTTSAHGINPYSPTHMAKCIGQQQNHLPPINSSSIWPNFVQEASTFNKFHNQHNQVQTIQKQEFQAPQIIQPQTPRSRKRKSQQGKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCTARKQVERSNTEADMFIVTYTGDHNHPKPTHRNSLAGSTRTKSPTIHQPTSISCQANNANSSSSSLGASVEEEEDMEVEMETDEEGEEGCEL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4466 294 MobiDBLite consensus disorder prediction 137 151 - -
Psa6g4466 294 ProSiteProfiles WRKY domain profile. 165 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g4466 294 MobiDBLite consensus disorder prediction 226 294 - -
Psa6g4466 294 MobiDBLite consensus disorder prediction 137 160 - -
Psa6g4466 294 Gene3D WRKY domain 154 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g4466 294 MobiDBLite consensus disorder prediction 233 271 - -
Psa6g4466 294 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 278 IPR044810 GO:0003700
Psa6g4466 294 Pfam WRKY DNA -binding domain 172 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g4466 294 SMART WRKY_cls 170 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g4466 294 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 278 - -
Psa6g4466 294 MobiDBLite consensus disorder prediction 272 294 - -
Psa6g4466 294 SUPERFAMILY WRKY DNA-binding domain 165 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4466 Psa-Chr6 391533094 391535039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4466 149 245 WRKY Transcription Factor Family AT5G52830 81.443 6.67e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g4466 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4466 K13425 - cam:101509183 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3640 4 305536081 305538160 Psa6g4466 6 391533094 391535039 ECH
Psa3g2448 3 208140583 208142462 Psa6g4466 6 391533094 391535039 ECH
Psa7g0680 7 46697717 46699375 Psa6g4466 6 391533094 391535039 ECH
Psa6g4466 6 391533094 391535039 Psa6g4466 6 391533094 391535039 ECH