Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4463 ATGCAGATCTTCGTCAAAACCCTGACGGGGAAAACCATCACCCTCGAGGTCGAGTCTTCCGACACCATCGACAATGTCAAAGCAAAGATCCAAGATAAGGAAGGAATCCCACCGGACCAACAGCGACTGATCTTCGCCGGCAAACAGCTAGAAGACGGTCGCACTCTTGCTGACTACAACATCCAGAAGGAATCCACACTCCACCTTGTTCTCCGTCTCTGTGGTGGAGCCGAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAGAAGATTAAGCACAAGCATAGGAAGGTGAATCTAGTTGTTCTTCAGTTTTACAAGGTCGCTCATTCTGGGGAAATTTTGAAGGTACGATCTGAAGCTTTTGTTGTAAAACCTAATTATGTTGGTGAGACTTGGGCCTTTGGCCCAAGCGATTTTGGCCTGCGTGTACACTCCCTCAATGCTACTGCACCCCATCCGATTGGGCTCTGA 474 0.4895 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLCGGAEKRKKKTYTKPKKIKHKHRKVNLVVLQFYKVAHSGEILKVRSEAFVVKPNYVGETWAFGPSDFGLRVHSLNATAPHPIGL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4463 157 PANTHER UBIQUITIN 1 121 - -
Psa6g4463 157 CDD Ubl_ubiquitin 1 76 - -
Psa6g4463 157 Gene3D - 1 80 - -
Psa6g4463 157 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Psa6g4463 157 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa6g4463 157 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa6g4463 157 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa6g4463 157 Pfam Ubiquitin family 3 73 IPR000626 GO:0005515
Psa6g4463 157 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa6g4463 157 Gene3D - 81 123 IPR038582 -
Psa6g4463 157 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Psa6g4463 157 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 121 - -
Psa6g4463 157 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4463 Psa-Chr6 391438516 391439875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4463 1 121 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 86.777 3.94e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4463 K02977 - fve:101295174 187.963