Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4460 ATGGAAGATCTTCCATCACCACTTCCTCCAAAGACATACACACTAACCGCAACTTCAATCTCTTACACCAAAAACCTACAAACAAACAACATCATCATTGCACCATTTCTCATCTTCAAAAACTGTACCCCAACTCCACCAACCTACATCCTCAAAGATGTTTCCCTCACAGCTTACCCTTCTGAGATTCTCGCCATTGTTGGTCCAAGTGGTGCAGGAAAATCAACTCTTTTAGACATTCTTTCCGCTAGAAGATTACCCTTAAGTGGAACACTGTCACTCAACTCTTCACCTATTACCAACCCTTCAACGTTCAGAAAACTCTCAGCTTATGTTCCTCAGCATGATGCATGTCTTCCTATGTTAACTGTTGCTGAAACTTTTGCCTTTTCTGCTTCTCTTCTTAAGCCGAAAACCATTGATATTGCTTCTATTGTTTCATCTCTTTTGAATGAACTTAGACTAACACATTTGGCTAATACAAGGCTTAACCATGGTTTGTCTGGTGGTGAACGTAGAAGGGTCTCTATAGGACTTAGTCTTCTTCATGATCCTGCTGTTTTGTTGCTTGATGAACCTACTTCTGGTCTTGATAGTTCATCTGCTTTCAAAGTCATGCAAACTCTTAAATCAACTTGTGTTTCGTATAATAGAACCATTGTTCTTTCCATTCATCAACCTAGTTTCAAGATTCTCTCTTGTATTGATAGAATCTTGCTTCTTTCAAAAGGAACTGTTGTTCATCATGGAAGCTTAGCTTCACTTCAATCATTCTTGCATTCAAAAGGGTTCACTGTTCCACATCAGCTCAATGCATTGGAATATGCTATGGAAATATTGAACCAGTTGAATGAGGTTAGTCTTAGTCCAATGATTACTCCACCGGAATCACCAGAAAATTATAAATCTACTATAGTTTCTTCTGTATCTGACAATATTGGAAGAACTAAAAGAAAAAGCAAAGATCTCAGGTACAAGAGTTCAAGGGTTCATGAAATTTGTACACTTTTTAAACGGTTTTGGAAGATCATATACAGAACAAGACAACTTCTTTTGACAAACACAGCAGAAGCACTTCTTGTTGGTCTTGTTTTAGGAACAATTTACATAAACATTGGGTTTGATAAAGAAGGTATTGTGAAAAGGTCTGGTTTATTTGCATTCACTCTAACATTCTTACTATCTTCCACAACTGAAACACTTCCAATCTTTATAAATGAGAGACCAATCTTGTTAAGAGAAACATCAAGTGGTGTTTATAGGCTATCATCTTATCTTATAGCAAACACACTTGTTTTCTTGCCATATTTGCTAGTAGTTGCTGTTATTTACTCTATTCCAGTTTATTTCTTGGTGGGCCTTTGTGGTTCTTGGCTATCTTTTGCTTATTTTGTTTTAGTCATTTGGGTTATAGTTCTTATGGCAAACTCATTTGTCCTTTTCTTGAGCTCTCTTGCACCAAACTACATTGCTGGAACTTCACTCTTGACAGTGCTACTTGCAGCATTTTTTCTGTTTTCCGGTTACTTTATCTCCAAGGATTGTTTACCTAAGTATTGGCTCTTCATGCACTTCTTTTCTATGTATAAATACGCTCTCGACGCGCTTCTTATCAACGAGTATTCTTGCTTAGCTACAAGGTGTTTGATATGGTTTCAAGAGAATGATCGAGAGTGCATGATCACCGGCGGTGATGTGTTGCAGAAGAGAGGGCTCCATGAGAGACAGAGATGGACCAATGTTTACTTTTTGATAGGTTTCTTTGTTTTTTATCGTGTCCTTTGTTTCTTTGTTTTGCTTAGAAAGATTTCAAGATCCAAAACATGA 1827 0.3733 MEDLPSPLPPKTYTLTATSISYTKNLQTNNIIIAPFLIFKNCTPTPPTYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARRLPLSGTLSLNSSPITNPSTFRKLSAYVPQHDACLPMLTVAETFAFSASLLKPKTIDIASIVSSLLNELRLTHLANTRLNHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAFKVMQTLKSTCVSYNRTIVLSIHQPSFKILSCIDRILLLSKGTVVHHGSLASLQSFLHSKGFTVPHQLNALEYAMEILNQLNEVSLSPMITPPESPENYKSTIVSSVSDNIGRTKRKSKDLRYKSSRVHEICTLFKRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIVKRSGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAVIYSIPVYFLVGLCGSWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDCLPKYWLFMHFFSMYKYALDALLINEYSCLATRCLIWFQENDRECMITGGDVLQKRGLHERQRWTNVYFLIGFFVFYRVLCFFVLLRKISRSKT* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4460 608 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524
Psa6g4460 608 Pfam ABC transporter 51 195 IPR003439 GO:0005524
Psa6g4460 608 Pfam ABC-2 type transporter 332 541 IPR013525 GO:0016020|GO:0140359
Psa6g4460 608 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 7 603 - -
Psa6g4460 608 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 603 - -
Psa6g4460 608 Gene3D - 39 288 IPR027417 -
Psa6g4460 608 SMART AAA_5 60 245 IPR003593 -
Psa6g4460 608 Pfam ABC-2 type transporter 225 298 IPR043926 GO:0140359
Psa6g4460 608 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 268 IPR003439 GO:0005524
Psa6g4460 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4460 Psa-Chr6 391401987 391404440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4460 46 263 Calmodulin-binding Proteins AT2G36910 27.679 2.92e-11 64.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4460 6 391401987 391404440 Psa6g4460 6 391401987 391404440 ECH