Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4449 ATGGTGAAAAACGTTGGAGTTGGAAGTGATGCTGAGTCTGATGAGTTTATGGAGTACCTCATGAAACAAGTCATTGATGGAAAGGATAGTGATGTCACATTTGATAACTTTCCTTTTTACTTAAGTGAAAGAATCAAAATTTTGTTGACAAGTGCGGGACATTTTCATTTAAGACAACATGACCTATCCAAGCACACTACGAACCTTTCGCCACTGAGCCGAGCTATTTTGCTTTCTGAACCTACCGAGCTTTATCATCATATGCTTGCCAAAGCTTTAGCAAATTGCTATGGATCGAAGTTACTGTATCTAGATATTGATTACTTCTCTTCGAAGATGCGGGGCAAAGATGGATGTTCTACAAAAGCACGGCATTTAAAAAGGTCCAAATTTGAGGCGGCTTTGGAGTGTCTGTCTGGTTTACTTAGTCATCTGCCGATCCTCCCTAAAACAGTTCCTTCGAAGTGCAAATGCCCAGACTGTTCTAATGCAAAGCTTTTTCTATATTCACTCTCCAAGGTCTTGGTTTCTATATTAGAAACTGGTTCTGTCATTTTATACATCAAGAATGCTGAGAAGATCTTTCTTCGATCACCAAGGATGTACAGTTTGTTCAAAATACTATTCGATAAACTTTCAGGACCAGTGTTGATACTCGGTTCTAGGTCTGATGATTTAAAAGACGATTCTACAAAAGTCAATGAAAAACTCACTAAGTTATTCCCTTACCATATTGAGATTAAACCGCCTCAGGATATGACTCATCTCAAAATCTGGACAGAACAACAAAAAAAGGCCATGGAAAAGACTTCTTTGGAAGATAAAACCGCCCGCGTTGCTGAAGTGTTTGCAACAAATGGCATTGATTGTAATGTCTTGGATTCAATTAGTAGTACTGATATGATGATACTTAGTAATCACACCGAAGAGATTGTGGCATCTTCAATTTTTTATCACTTGAAGAATACTGAAAATCCAGAGTACCGAAATGGAATCCTAACTATATCGGCCACGAGTTTGTGCCATGTATTGAGCCTTTTTCAGGAGGATGAAAGTGGTGAAAATGATGAAAACAACACTAAAAATAAGTCAAAAAAGGATGATGCCGGAAAAGATAAACCTATTTCAAACGGGACCGAGAAAGACAGTGATATTAAAGCTATTTCAAACGAAAAAAAGAAAGACAGTGATATTAATGATACTACAAAACCTAAAGTTCCTGCTGACAACTCCTATGAGGAGTTAATAAGAAAAGAGCTTATCCCTGCAAATGAGATAAAGGTGAGTTTTTCAGATATTGGTGCATTGGATGATGTAAAAGAATCACTTCAAGAAGTGGTTATGCTTCCCCTTAGAAGACCAGATCTATTCAAAGACGGTGGGTTATTGAAGCCATGTAAAGGTGTGTTGCTTTTTGGACCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTAGAGCAAGTTTCATCAATGTCTCTTTGTCTGTCATCACTACTATGTGGTTCGGAGAAAGTGAAAAGAATGTTCGAGCTCTGTTTTCATTAGCGGCAAAGGTTGCCCCGACGATTATTTTCATTGATGAAGTTGATAGCTTGCTTGGGAAGCGGACTTCGGGTGAGCAAAACGTTGTGAGAGGGATTAAAAATGAATTCATGACCCATTGGGATGGACTTTTGTCAAAACCTGATGAGAAAGTTATTGTTCTTGCTGCGACCAACATGCCATTTGCCCTTGATGAAGCAGTTATAAGACGGTTTCAGCGCAGGATCATGGTTGGTCTTCCGTCTGCTGAAAACAGGGAAGTGATCTTGAGAACTCTTCTAGCTAAGGAAAAACATGAAGATATAGACTTCAAAGAGCTTTCGACTATGACAGAAGGATACAGTGGGAGTGATCTTAAGAACTTGTGCATGACTGCAGCATATCGCCCCATTAAGGATCTTATGCAACAGGAGAAGGCCAAAGAAATGAAAAAGAAGAAAAAAGAGGCAGAAGCTGAAATCTCAGAAGTTGCCTCCAATGCTACGGAAGAAGATCAAGTGATTGTCCTTAGGCCTTTAAACATGGAAGACATGAAAGATGCAAAGAATAAGGTGACTGCAAGCTATGCTGAAGGAGGATCAAATATGAAAAAGCTAGAGGAGTGGAATGGTTTGTATGGAGAAGGAGGTTCAAGGAAGAAAAAGGAGCAGCTTAGTTATTTCTTATAG 2226 0.3913 MVKNVGVGSDAESDEFMEYLMKQVIDGKDSDVTFDNFPFYLSERIKILLTSAGHFHLRQHDLSKHTTNLSPLSRAILLSEPTELYHHMLAKALANCYGSKLLYLDIDYFSSKMRGKDGCSTKARHLKRSKFEAALECLSGLLSHLPILPKTVPSKCKCPDCSNAKLFLYSLSKVLVSILETGSVILYIKNAEKIFLRSPRMYSLFKILFDKLSGPVLILGSRSDDLKDDSTKVNEKLTKLFPYHIEIKPPQDMTHLKIWTEQQKKAMEKTSLEDKTARVAEVFATNGIDCNVLDSISSTDMMILSNHTEEIVASSIFYHLKNTENPEYRNGILTISATSLCHVLSLFQEDESGENDENNTKNKSKKDDAGKDKPISNGTEKDSDIKAISNEKKKDSDINDTTKPKVPADNSYEELIRKELIPANEIKVSFSDIGALDDVKESLQEVVMLPLRRPDLFKDGGLLKPCKGVLLFGPPGTGKTMLAKAIANEARASFINVSLSVITTMWFGESEKNVRALFSLAAKVAPTIIFIDEVDSLLGKRTSGEQNVVRGIKNEFMTHWDGLLSKPDEKVIVLAATNMPFALDEAVIRRFQRRIMVGLPSAENREVILRTLLAKEKHEDIDFKELSTMTEGYSGSDLKNLCMTAAYRPIKDLMQQEKAKEMKKKKKEAEAEISEVASNATEEDQVIVLRPLNMEDMKDAKNKVTASYAEGGSNMKKLEEWNGLYGEGGSRKKKEQLSYFL* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4449 741 Pfam ATPase family associated with various cellular activities (AAA) 469 598 IPR003959 GO:0005524|GO:0016887
Psa6g4449 741 MobiDBLite consensus disorder prediction 350 406 - -
Psa6g4449 741 Coils Coil 650 679 - -
Psa6g4449 741 ProSitePatterns AAA-protein family signature. 571 590 IPR003960 GO:0005524|GO:0016887
Psa6g4449 741 MobiDBLite consensus disorder prediction 354 402 - -
Psa6g4449 741 SMART AAA_5 465 601 IPR003593 -
Psa6g4449 741 Gene3D - 427 722 IPR027417 -
Psa6g4449 741 CDD AAA 467 599 - -
Psa6g4449 741 Pfam AAA+ lid domain 620 663 IPR041569 -
Psa6g4449 741 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 161 741 - -
Psa6g4449 741 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 12 152 - -
Psa6g4449 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 655 IPR027417 -
Psa6g4449 741 Gene3D - 600 704 - -
Psa6g4449 741 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 12 152 - -
Psa6g4449 741 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 161 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4449 Psa-Chr6 390989784 390994645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4449 427 678 Calmodulin-binding Proteins AT3G56690 38.224 1.15e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4449 - - cam:101505986 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4449 6 390989784 390994645 Psa6g4449 6 390989784 390994645 ECH