LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4448	ATGGCTTCTTCAGTTATGTACTATTGGATTGTTGTTACTATATTCTTGAGTTGTTCCGGTGATTCCGTTTCGAGTGAGATTGAGTTAGGCTCAAGATTATTGGCCAGTAAGGATCAAGTTTGGGTTTCTGATAATGGAACATTCGCTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTCGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCAACATCTCAAGAAGCGATTTTGGAGCTTGACACAACAGGAAACCTCATTCTCGTCGACAAAAAAGTCACCATATGGGCCTCAAACACCTCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAACAAAAACAATCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACGCTTCTTCCAAATCAGCCTCTAACAGTTTCTTCAGAGTTAACATCGTCAAAATCTTCGTCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCGACTTCGTTAAGTCTTGCACTAACTTACAATCTTCCAGAGAGTTACCAAACTTTTGATGAAAATGAATCATACGCAAATTATTCTTATTGGCAAGGTCCTGAGATTTCCAATGTAACTGGAGAAGTTATCGCGGTTTTAGATCAGGCTGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGCGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACGCCGTTAACCGTTCTCAGGAGACTGACGCTCGAAGAGAACGGAAATCTGCGATTGTATCGATGGGAAGACATAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGTGTTTGTAAATTGGATAAAACAAAGACTAATGCTTCTTGCACTTGCTTACCAGGAACTTCTAAAGTTGGTAGAGATGGACAATGTTATGAGAATTCATCTCTTGTTGGAAAATGTACTAATAGAAAAAACGAAAACACGACATCGAATTTTAGAATTTCAACTGTGCAACAAACTAATTATTATTTCTCTGAATCATCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCGTGTTTATCAGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTTGGTGGTTTTGAAGATACGAGTTCTACTTTGTTTGTGAAGGTTCGAGCGAATAGTTCATGGGCACCAGAAGGACAAGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCTCTATGTTACTGTATTATAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAAAGTTCATTGGTCTTATCAGGTGCTCCGGTGAATTTCACTTACCGCGCTTTGCAAATCAGGACAAGCAACTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTGGCAGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCCGAGGGACCTCAGAGGCTTTTAGTTTACGAGTTCATGAAGAATGGTTCGCTGGATCAGTGGATCTTCCCTTCGATTCGAGGACGAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCTTACTTTCATGAGCAGTGTAGAAATAAGATAATACACTGTGACATCAAACCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACCAGAGGCTATTTGGCACCGGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGCTACGGAATGCTTCTTTTAGAAATCATTGGTGGTAGAAGAAATCTTGATTTGTCCTTTGATGCAGAAGATTTTTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAGTGGATCAACCATCAAAGTGGCAGATAGAAGATTAAATGGGGCAGTGGATGAGGAAGAACTAACAAGAGCTTTGAATGTTGCCTTTTGGTGCATCCAAGATGATGTTTCAATGAGACCACCAATGGGAGAAGTGGTGAGAATGCTTGAAGGTCAAGAATCAAATATCATAAACATGCCACCAATGCCACAAACAGTACTAGAGTTAATTGAAGAAGGGTTGGATCATGTCTACAAAGCTATGAAAAGAGAGTATAATCACTATAGCTCATTCACCATTACTAGTCATCTTACATCTCATGCCACGTGTAGCAATTCCACAATATCGCCGACTCGCCCTGACCAACAACACTACACCAACTCCCTCACCGGCGCAATTCACCAACCGCACAATTTCCGATACAACGCCAACATGGAGAAGATGCATTACGCTGAGGAGTTAGTAAGAGAGTTTCTCGTCTTTCGAGGATTCACCAACACTCTCGAAGCTTACGAAACCGAATTGCGCACCGACGTCGGAAAAGGCTTTCAGGTCGACAAAATTCTTGACCTAATCTTCTCTTTATACGTTCCGAAGTTTCAGATTGATAAATTGGTAGCGCTTCTCGGTTTCTTCAAACACTATCTCTCTTCGTCGTTCGAAACTACACTCGTTTCAACTTTCTCTAAATTGGAAGCTTCTCTTTTGCGATTCTACGTCGTTCACGCTTTGCAATCCAATCGGAGGGATAAGGTTGTTGAGTTTTTCACTGTTCATGGTCCTGATTTGTTGCAGAGTTCTCAGGAGGATTGGACTCAATGGTTTGCAATTCCTTATGTGAAGAATCCACGATTGGATCCGGAATTTCGAATTTTTTTCTCCAAGGAGTGGTATCAGGCCTTGCATCTTTCTGTTAGAAATTTCTTTAGTGAGATCTTCAATGCTACTCATATCCTTCCTAACATTTGTTTGAAAGAAAAAAAGGGGGGAAAGGCAAATGAAACAAGTCACAGAATGATATCATGCTACTGCTTTGAAGCACTTCACACTGATAGTTGCAGGGTGTTTATTAATACAAACTGGGCCAACTAG	3336	0.3996	MASSVMYYWIVVTIFLSCSGDSVSSEIELGSRLLASKDQVWVSDNGTFAIGFTPSDTDNRLFTFGIWFASLPGDRTFVWSPNRNSPTSQEAILELDTTGNLILVDKKVTIWASNTSNANVESATMSESGNFILHNKNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPEISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDINGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKVGRDGQCYENSSLVGKCTNRKNENTTSNFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWAPEGQGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLSMLLYYSVHRKRTLKREMESSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGRDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDLSFDAEDFFYPGWAYKEMTSGSTIKVADRRLNGAVDEEELTRALNVAFWCIQDDVSMRPPMGEVVRMLEGQESNIINMPPMPQTVLELIEEGLDHVYKAMKREYNHYSSFTITSHLTSHATCSNSTISPTRPDQQHYTNSLTGAIHQPHNFRYNANMEKMHYAEELVREFLVFRGFTNTLEAYETELRTDVGKGFQVDKILDLIFSLYVPKFQIDKLVALLGFFKHYLSSSFETTLVSTFSKLEASLLRFYVVHALQSNRRDKVVEFFTVHGPDLLQSSQEDWTQWFAIPYVKNPRLDPEFRIFFSKEWYQALHLSVRNFFSEIFNATHILPNICLKEKKGGKANETSHRMISCYCFEALHTDSCRVFINTNWAN*	1112

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4448	1111	CDD	B_lectin	36	148	IPR001480	-
	Psa6g4448	1111	Gene3D	Transferase(Phosphotransferase) domain 1	608	816	-	-
	Psa6g4448	1111	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT	3	865	-	-
	Psa6g4448	1111	CDD	STKc_IRAK	538	806	-	-
	Psa6g4448	1111	Gene3D	Phosphorylase Kinase; domain 1	496	607	-	-
	Psa6g4448	1111	Gene3D	-	22	148	IPR036426	-
	Psa6g4448	1111	SUPERFAMILY	alpha-D-mannose-specific plant lectins	76	150	IPR036426	-
	Psa6g4448	1111	PANTHER	OS07G0415500 PROTEIN	3	865	-	-
	Psa6g4448	1111	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	655	667	IPR008271	GO:0004672\|GO:0006468
	Psa6g4448	1111	Pfam	Protein kinase domain	535	739	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4448	1111	ProSiteProfiles	Protein kinase domain profile.	532	811	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4448	1111	SMART	blect_4	32	148	IPR001480	-
	Psa6g4448	1111	Pfam	D-mannose binding lectin	76	163	IPR001480	-
	Psa6g4448	1111	ProSiteProfiles	Bulb-type lectin domain profile.	25	146	IPR001480	-
	Psa6g4448	1111	SMART	serkin_6	532	804	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g4448	1111	ProSitePatterns	Protein kinases ATP-binding region signature.	538	561	IPR017441	GO:0005524
	Psa6g4448	1111	SUPERFAMILY	Protein kinase-like (PK-like)	510	806	IPR011009	-
	Psa6g4448	1111	Pfam	S-locus glycoprotein domain	256	337	IPR000858	GO:0048544

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4448	Psa-Chr6	390885928	390890616	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g4448	475	816	Receptor kinase-like Gene Family	AT5G20050	42.623	1.22e-76	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Psa6g4448		Pkinase	2.1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4448	-		-	gmx:100794281	1435.62