Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4429 ATGGCAGATCTTGTTAATCACAGGAATGCAGACCGTGACATTCAGCAGGCGTTGATTGCTTTGAAAAAGGGTGCTCAATTGCTTAAATATGGTCGTAAAGGAAAACCAAAGTTTTGTCCATTTAGACTTTCCAAAGACGAGTTGTCATTAATCTGGTTTTCGAGTAGTGAAGAAAGAAGTCTGAAACTCTCTTCTGTCTCAAAAATTATTCCTGGACAAAGAACTGTTGTTTTCCAGCGATTTCCGCGTCCTGAGAAGGATTATTTATCTTTTTCACTTATTTATAACCACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCGGGTCTCGGGGCATTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGTGTGATGGAGGCCTGTATCTTGATGATAGTAAAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTCCGTGCTTCTCAAGACATCAGTTCTCCTGACGTTTCTGCTAGCGTACCAAACACTTCTCCGAAGTTCTCTCAGCCTGAAAATACATTAAATTTTGAAAGGTCACATGCACCATCAAACCCATTAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTTTCAAGTGCACCCAGCACGTCCAGCCATGGGTCTGCACCGGATGACTATGATGCTCTTGGAGATGTATACATATGGGGGGAGGTTATCTCTGAGAATATTATAAAAGTCGGTGCTGATAAAAATGTCAGTTTTTGTAGCCCTAGAACTGACATTCTCCTCCCGAAGCCACTTGAATCCAATGTGGTTTTAGATGTACTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAAATGTTTACTTGGGGTGAAGAATCTGGCGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTAGCGTCTTCAACAGTTGATTTTGTTGCTTGTGGCGAGTTCCATACCTGCGCTGTTACAATGACTGGGGAAATATATACATGGGGTGATGGCACTCACAATGCTGGACTTCTTGGTCATGGAACCAATGTTAGTCACTGGATACCAAAGAGAATCGCGGGTCCACTAGAGGGACTTCAGGTTGCTTTTGTCACTTGTGGTCCGTGGCACACAGCCTTGATAACTTCAACTGGGCAACTATTTACATTTGGCGACGGAACATTCGGTGTCCTCGGCCATGGAGATAGAGAAAATATTTCATATCCTAGAGAAGTAGAATCGTTATCTGGGTTGAGGACTGTATCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTAGAGGTCATTGTGGCACAATCCAGTGCAAGTATATCTTCGGGTAAATTGTTTACTTGGGGAGATGGAGATAAGAATCGTCTAGGACATGGAGATAAGGATGCTCGGCTCGAACCAACCTGTATACCTGCGCTTATCGATTACAATTTTCATAGAATTGCCTGTGGGCACAGTTTGACAGTAGGTCTGACAACGGCTGGACGTGTTTTTACGATGGGTAGCACTGTTTACGGCCAGCTTGGGAATCCCCAGTCTGATGGAAAACTTCCCTGCTTGGTCGAAGACAAGCTTGCTGGAGAATGTGTCGAAGAAATTGCATGTGGGGCTTATCATGTTACTGTTTTAACCTCAAGGAATGAAGTTTATACATGGGGCAAGGGTGCAAATGGAAGATTAGGTCACGGAGACGTTGAAGATCGAAAAATTCCAACTTTGGTTGAAGCCTTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTATTCGGCTGCGATATGCCTACATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCGTTTGGATTCACTAGAAAGCGGCACAACTGTTATAATTGCGGACTTGTGCACTGCCATTCATGCAGCTCAAGGAAAGCGTTAAGAGCAGCCCTTGCTCCTAATTCTGGGAAGCTGTATCGAGTTTGTGATTCTTGTTATGTAAAATTGAACAAGGTTGCAGAATCCAGCAATAATAATCGGAGGAACGCAATGCCTCGTATTCCAGGCGAAAACAAGGATAGGTTAGAAAAGTCTGAGCTGAGATTGACGAAGTCAGCCGTGCCTTCTAATATGGATTTGATAAAGCAATTAGATAGTAAGGCAGCCAAACAAGGGAAAAAAGCTGATACATTCTCTCTGGTTCGCGCTTCACAAGCTCCGTCTTTGCTACAGCTGAAAGATGTTGTCTTAGCTACTACTATAGATGTAAAACGCACAGTCCCGAGACCTGGTTTTACACCGTCTGGAGTGAATTCCAGGTCTGTCTCACCTTTCTCTAGAAGATCGAGTCCTCCTCGTTCAGCTACGCCCATTCCAACAACATCCGGACTCGCCTTCTCAAAAAGCATTACTGATAGTTTGAAGAAAACTAATGAACTTTTGAATCAAGAAGTGCTGAAGTTGCGCTCTCAGGTTGAGACCCTGAGACAGAGATGTGAGCTGCAAGAATTAGAGCTTAAAAAGTCAGCAAAAAAGACTCAGGAAGCTATGGCAGTGGCGAATGAGGAATCTGCTAAATCCAAAGTTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAAGATCTGGCAGAGAGGCTTCCTCCTGGTGTTTATGATGCTGATGACATGAAACCAGCGTACCTGCCTAATGGTTTCGTCGAGACAAATGGCATCCACCACCGAGACTCAAACGGGGATCCCCACCACTCAAGGGCAGAGTCGATCAGTGGCTCCAGTTTGGCTTCCATAGGACTCGAATCTTCTCTGATGAATAGAACCGATAGGAATTCACCTGGAAGCTATGCAGCTACTCTTTACCAGCAGAACCGGGGATTTGCGACCTCTAACGGGACAGATGATTACCGAGATGTTAACTTGCCAAATGGCGGTGGCACAATCCAGACAACCAACAGTAGCGTGTTGCATACAATTGACGGCAGGGATTCTGGAAATTTCCGAGATGACGAGAGTGGCTCGAGATCAAGAAATGATGCAATGCCTGCTAATAGTAATAATAATCAAGTTGATGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATAACTCTGGTTGCCATGCGAGACGGAACAAGAGATCTGAGGAGAGTGCGCTTCAGCCGAAGAAGATTCGGAGAGCACCAAGCCGAGACTTGGTGGTCAGAGAATCGGGATAGGGTATATGAAAGGTACAATGTTCGTAGCACAGACAAGTCGACCGGCCAAACAGCGCGGAAAGCAGAAGGTGGTGGTTCACCTGTTGTACAATAA 3375 0.4465 MADLVNHRNADRDIQQALIALKKGAQLLKYGRKGKPKFCPFRLSKDELSLIWFSSSEERSLKLSSVSKIIPGQRTVVFQRFPRPEKDYLSFSLIYNHGKRSLDLICKDKVEAEVWIAGLGALISSGQGGRSKIDGWCDGGLYLDDSKDLTSNSPSESSVRASQDISSPDVSASVPNTSPKFSQPENTLNFERSHAPSNPLNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVISENIIKVGADKNVSFCSPRTDILLPKPLESNVVLDVLQIACGVKHAALVTRQGEMFTWGEESGGRLGHGVGKNVVQPRLVEALASSTVDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTNVSHWIPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENISYPREVESLSGLRTVSVACGVWHTAAIVEVIVAQSSASISSGKLFTWGDGDKNRLGHGDKDARLEPTCIPALIDYNFHRIACGHSLTVGLTTAGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGECVEEIACGAYHVTVLTSRNEVYTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNSGKLYRVCDSCYVKLNKVAESSNNNRRNAMPRIPGENKDRLEKSELRLTKSAVPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLATTIDVKRTVPRPGFTPSGVNSRSVSPFSRRSSPPRSATPIPTTSGLAFSKSITDSLKKTNELLNQEVLKLRSQVETLRQRCELQELELKKSAKKTQEAMAVANEESAKSKVAKEVIKSLTAQLKDLAERLPPGVYDADDMKPAYLPNGFVETNGIHHRDSNGDPHHSRAESISGSSLASIGLESSLMNRTDRNSPGSYAATLYQQNRGFATSNGTDDYRDVNLPNGGGTIQTTNSSVLHTIDGRDSGNFRDDESGSRSRNDAMPANSNNNQVDAEWIEQYEPGVYITLVAMRDGTRDLRRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSTGQTARKAEGGGSPVVQ* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 697 716 - -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 520 567 IPR000408 -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Psa6g4429 1124 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Psa6g4429 1124 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Psa6g4429 1124 CDD FYVE_like_SF 633 686 - -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 998 1041 - -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 152 186 - -
Psa6g4429 1124 Coils Coil 880 900 - -
Psa6g4429 1124 CDD PH_PLC_plant-like 12 124 - -
Psa6g4429 1124 Gene3D - 13 129 IPR011993 -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Psa6g4429 1124 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1106 - -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Psa6g4429 1124 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Psa6g4429 1124 SUPERFAMILY FYVE/PHD zinc finger 624 699 IPR011011 -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 998 1013 - -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 1101 1124 - -
Psa6g4429 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Psa6g4429 1124 Gene3D - 457 636 IPR009091 -
Psa6g4429 1124 Gene3D - 361 456 IPR009091 -
Psa6g4429 1124 Gene3D - 186 360 IPR009091 -
Psa6g4429 1124 SUPERFAMILY PH domain-like 13 123 - -
Psa6g4429 1124 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Psa6g4429 1124 MobiDBLite consensus disorder prediction 1015 1029 - -
Psa6g4429 1124 Pfam Transcription factor regulating root and shoot growth via Pin3 1045 1099 IPR013591 -
Psa6g4429 1124 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Psa6g4429 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Psa6g4429 1124 ProSiteProfiles BRX domain profile. 1045 1100 IPR013591 -
Psa6g4429 1124 SMART fyve_4 622 691 IPR000306 GO:0046872
Psa6g4429 1124 Pfam Transcription factor BRX N-terminal domain 875 908 IPR027988 -
Psa6g4429 1124 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Psa6g4429 1124 Coils Coil 824 865 - -
Psa6g4429 1124 MobiDBLite consensus disorder prediction 785 811 - -
Psa6g4429 1124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 697 IPR013083 -
Psa6g4429 1124 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1106 - -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Psa6g4429 1124 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4429 Psa-Chr6 389798130 389806514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4429 1046 1116 Major Intrinsic Protein MIP AT1G31880 43.662 3.63e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4429 - - gmx:100783270 1857.8