Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4422 ATGGATCCGAGCTTCATCGGAACTACTCCTTCTACTGCGGAGAACCACCACCACACTTCCAATTGTGCTGACACCATGGAGTTCGACGAAAGGTTGGATAACTTGCTTCGGCGGGATCTTAGTGAGTTCGACTTCAGCCTCTTTGACATCCCATTACCGCTTTCTTCACATCAGCCAGTAACAGGTGGGATGCCTATTGATCCGGTTCCTGCACCTGCACAGCCGCCACAGTTTCAGAGCTTCTCTGAGGTATCTGATAATGTCAATTTGATGAAAACTAAGAGTGCCGTAGCTGCATATGGCAGAAACCACGGTGGCGAGACTGTATTAGGCCACCGCCATGACAGCGGGTCCTCAGCACCATCGTCTTACAAGAAGAGGACGGTTATACCTGCAGAAAAGCTTGCGGAACTTGAAATTGCTGATCCCAGAAAAGCACAGAGGATTATTGCTAATCGGATCTCGGCAAAAAAATCCAAGGAAAAGAAAAAAAATTATGAAAAAGAGTTAGAAAAGAGGGTTGAGTTGCTTCAGATCAAAGCAGATACTGTAACTGCCGAGCGTATGATGGCAATGAATGAAGCTATGGAATTAACTGCTGAGTACAAGAGAATCAAAGACCTCATACAATCTAAATTACAGCATCAAGAACAACAAAGAGCTGTCATTGAATTGATGAAGGATGAAGCAAATATTCTTGAGATGCAAATTCATGAACTCAATACAGCAATGGCTGATTTATCTTTTGGTGAACCAGCCTCTCAATCCCAGCTTCAGATTCCTCCTCAGCCAGAATTCTACACACCGCCGCAGCCGCCTCTGGTTCCTCCTCCACCATCTTCATTTGGCGAGCCTTTACTTCCTCCTCTACCATCTTCCCTTGGCGAGCCTTTACTTCCTCCTCTACCATCTTCCTTTAGCGAGCCTTTACTTCCTCCTCCACCATTTCCGATTGGCGAGCCTTTAGAGCCTTTAGTTCCTCCTCCGCAATCTCTCTTTGGTGAGCCTTTAGTTCCTCCTCAGACATCTCCCTTTGGTGAGCATTTACTTCCTCCTCCGTTAACTCCCTTTGGTGAGCCTTTTAGTGATCATTTTATTGGCACCAGCTTTTCAAACAATCCATGGAACTAG 1131 0.4589 MDPSFIGTTPSTAENHHHTSNCADTMEFDERLDNLLRRDLSEFDFSLFDIPLPLSSHQPVTGGMPIDPVPAPAQPPQFQSFSEVSDNVNLMKTKSAVAAYGRNHGGETVLGHRHDSGSSAPSSYKKRTVIPAEKLAELEIADPRKAQRIIANRISAKKSKEKKKNYEKELEKRVELLQIKADTVTAERMMAMNEAMELTAEYKRIKDLIQSKLQHQEQQRAVIELMKDEANILEMQIHELNTAMADLSFGEPASQSQLQIPPQPEFYTPPQPPLVPPPPSSFGEPLLPPLPSSLGEPLLPPLPSSFSEPLLPPPPFPIGEPLEPLVPPPQSLFGEPLVPPQTSPFGEHLLPPPLTPFGEPFSDHFIGTSFSNNPWN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4422 376 SUPERFAMILY Leucine zipper domain 144 199 IPR046347 GO:0003700|GO:0006355
Psa6g4422 376 Coils Coil 156 187 - -
Psa6g4422 376 Gene3D - 144 195 - -
Psa6g4422 376 Pfam Basic region leucine zipper 143 178 IPR004827 GO:0003700|GO:0006355
Psa6g4422 376 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 205 IPR004827 GO:0003700|GO:0006355
Psa6g4422 376 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 77 264 - -
Psa6g4422 376 SMART brlzneu 140 204 IPR004827 GO:0003700|GO:0006355
Psa6g4422 376 Coils Coil 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4422 Psa-Chr6 389352531 389354276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4422 119 240 bZIP Transcription Factor Family AT1G43700 39.344 4.04e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa6g4422 bZIP_2 1.4e-05 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4422 - K20557 mus:103987690 80.1073