Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4410 ATGGGGAAGAAGAAACCATCGGTACGCGATGACGAGAATCCTCCGCAGCAAGGTGGTGGGAAATCGAAGAAGAAGGCTCAAGTCATCGACGATGATGAATACTCCATCGGAACTGAACTTTCAGAGGAGCCATCCCTGCCGCAGCCAGAAGAAAAGCAGGGGAAGAAGAAAGGTAAAAAAGCCAACTCTAAATTTTTACAAGCTAAAGATAATGGTGATGATTTTGATGGCGAGGACGAAGATGATGTGCCTGAAATTGTGTTTGCTGGGAAGAAAAAGGGGAAACCAAAGAAAAGTGGCGGTGGAAGTGTGTTTACTGCTGCGGCTGGTTTTAGTTTGCTTGGGGATGAGGAGGAAGTTGATAATGATGATGATGAACAGAAATCAGAGTTAACCGGTGATGGAGATGGCGATGAGGATGAACCTGTTGTTAGCTTTACTGGGAAGAAGAAGTCTTCAAAAGGAAGCAAGAAGGGCGATTCTTTGTTTTCATCTGCTAATTTTGATGAGATTGATGGAGAGGATGAGAGTAAGAATGAAAAGGTAGAAGAGGATGATGAAGATATAGGACCAATCACTTTCACTGGCAAGAAAAAGAAGTCATCCAAGTCTTCGAAGAAGGCGGTTAGTTCATTGAGTGCAGATATTCCGGATGAAGATAGTGTTTCTGTATCCGAGTCTGCTAAGGGTGGCGATGATAAAGATGAAGACGATGTTTTTTTAGTTGAATTTACTGGTAAAAAGAAGTCCTCTAAAAAGAAAAGTGGTAGTGCTGCTGCCAAAGTGAGTAATGAAATTGAGTTTGGGAATGAAAGTGTAGATGCTGTTGAGAGTGAGAAACCTAGTGCTGGAATTAGTAGTACTAATGCTGACAATGGCAATATAAGTAAGAGTGAAGAAATAGTTGGAACTTCCAAAAATAAGAAGAAGAATAAGAAAAAGAGTGGGAGAACTGCTCAAGAGGAGGATGATTTAGATAAGATTCTTGCAGAGCTTGGTGAAGCCCCTCCTACAGCAAAACCTTCTGCTCCTCCAAAGCAGGATGATAAAGTCCAGCCTACTCCGGAAGTTGGTTCTGCCCCTGCTGCTTCAGGGGAAAAAGAGGGAGAAGAGGAGACTGTAGAATCAGCTGCTGCAAAAAAGAAGAAAAAGAAGAAAGAAAAGGAAAAGGAGAAGAAGGCAGCTGCAGCCGCAGCCGGAAGTGCAACGGCAATTGAAACTGCAGAAGTAAAGGCTGAGACAGTTGAACCCAAGAAAAATGATTTGAAGACCAAAGCAGCTGCGGACAAGAAATTGCCAAAGCATGTTAGGGAGATGCAAGAATTACTAGCTCGAAGAAAAGAGGCTGAAGAAAAACAGAAAAGAGAAGAGGAGGAGAAGCTAAGGAAAGAAGAAGAGGAGCGACAAAGGCTAGAGGAACTTGAGAGACAGGCTGAAGAGGCTAAACGTAGAAAGAAGGAAAAGGAAAAGGAAAAACTTCAGAAAAAGAAGCTAGAAGGTAAATTGTTAACCGGTAAGCAGAAAGAAGAAGCCCGGCGATTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACAGGGGGTGTGACTCTCCCTGCTGGGGACACTGGTGCACCAGCCAAGAAGCCCATTTATCAGACAAAGAAGGGGAAATCAACTAGTCGAAATTATAATGGTGCTGCTTCTGTCAAGGCAGATGAAAGTATTGAAGCAAAGGAAAGTACCGCTGATTTGGATTCTGAGGAACCAAAGAAGGTTGAAGAAGTGGTGTCAGTGCAGAAGGAGGACATCATTGAACTTCCGGAAGCTGTTGTAGAGGATAGAGTGGAAGAAGATGATGTTGAGGATGAATGGGATGCTAGAAGCTGGGATGATGTCAATCTGAATGATAAGGGTGCATTTGCTGATGAAGAAGTTGACTCTGAGCCTGAATTGATTGTCAAAAAAGAGATTAAAACTGGCATACCTGCTAAAAATGCTGCAGGTGCTACAAGTAAAACTGTTTCGAAGCATGTCGCTGAAGAAATTGAAGATAGAAAACAGGCCAAAATTGGGGTTGAGGCCAAAAAGAAAAAACAGGACCAACAACAGTCTGCTGCGTCTTCTAAGCCGAGTGATGCAAACCTCCGGTCACCGATTTGCTGCATCATGGGTCATGTGGACACTGGCAAAACCAAGCTTCTGGATTGTATTCGAGGCACCAATGTTCAAGAAGGTGAGGCTGGCGGTATCACCCAACAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGTGATAGAACTAAGGAACTGAAAGCTGATGCAACACTGAAAGTTCCAGGTCTACTGGTTATTGATACCCCAGGCCACGAATCATTCAATAATCTAAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATCTTGGTTGTTGACATTATGCATGGCTTAGAGCCACAAACTAAAGAGTCACTCGACCTATTAAAAATGAGGAACACAGAATTTATTGTTGCATTGAATAAGGTTGATAGGCTTTATGGCTGGAAAACATGTCGCAATGCTCCAATTCGTAAAGCAATGTTGCAGCAGTCTAAGGATGTTCAAAATGAGTTCAATATGAGGCTCGATCAGATTGTTACCGAGTTCAAGGAACAGGGGCTAAATACTGCATTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGCGGTGAAGGAATCCCAGATATGTTATTACTATTGGTTCAGTGGACCCAAAAGACCATGATTGAGAAACTTACATACAGTGATGAAGTGCAGTGTACTGTTTTGGAAGTCAAGGTTATTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTCCTTCATGAAGGAGATCAAATAGTTGTAGCTGGAATGCAGGGTCCAATTGTTACCTCAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTTCGTGTTAAGGGATCATATATCCATCACAAAGAAATCAAAGCTGCGATGGGCATCAAAATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGCGCTAGTTTATATGTGGTGAAGCCTGATGATGATTTAGAACATATTAAAACAGCGGCCTTAGAAGACGTGGAGTCAGTCTTGAGCAGGATTGATAGGAGTGGTGAGGGTGTTTGTGTCCAGGCATCTACCCTTGGCTCATTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGCAGTGAATATTCCTGTTAGTGCTATAAGCATAGGCCCTGTACATAAGAAGGATGTGATGAAAGCCAGTGTAATGCTTGAAAAGAAACGAGAGTATTCAACTATATTGGCATTTGATGTCAAAGTCACCCCTGAAGCTAGGGAACTTGCAGATGAATTGGGCGTTAAAATATTTATTGCCGATATCATTTATCATCTATTTGATCAATTTAAGGCTTACATGGAAAACATTAAGGAGGAGAAAAAGAAAGAATCGGCAGATGAGGCAGTCTTCCCATGTGTTCTAAAGATCTTACCAAATTGTGTTTTCAACAAGAAGGATCCGATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGAACTCCAATTTGTATTCCGTCCCAAGATTTCATTGACATTGGACGCATTGCCTCCATTGAGAATAACCACAAACCAGTTGATTATGCAAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAGGAACAGCAGAAAATGTTTGGCAGACATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCGCGGAGATCTATTGATGTTCTCAAATCTGATTATCGGGATGAACTAAGTAATGAAGAATGGAAGCTGGTGGTGAAATTGAAGAGTCTTTTCAAGATACAATGA 3903 0.4189 MGKKKPSVRDDENPPQQGGGKSKKKAQVIDDDEYSIGTELSEEPSLPQPEEKQGKKKGKKANSKFLQAKDNGDDFDGEDEDDVPEIVFAGKKKGKPKKSGGGSVFTAAAGFSLLGDEEEVDNDDDEQKSELTGDGDGDEDEPVVSFTGKKKSSKGSKKGDSLFSSANFDEIDGEDESKNEKVEEDDEDIGPITFTGKKKKSSKSSKKAVSSLSADIPDEDSVSVSESAKGGDDKDEDDVFLVEFTGKKKSSKKKSGSAAAKVSNEIEFGNESVDAVESEKPSAGISSTNADNGNISKSEEIVGTSKNKKKNKKKSGRTAQEEDDLDKILAELGEAPPTAKPSAPPKQDDKVQPTPEVGSAPAASGEKEGEEETVESAAAKKKKKKKEKEKEKKAAAAAAGSATAIETAEVKAETVEPKKNDLKTKAAADKKLPKHVREMQELLARRKEAEEKQKREEEEKLRKEEEERQRLEELERQAEEAKRRKKEKEKEKLQKKKLEGKLLTGKQKEEARRLEAMRRQILNSTGGVTLPAGDTGAPAKKPIYQTKKGKSTSRNYNGAASVKADESIEAKESTADLDSEEPKKVEEVVSVQKEDIIELPEAVVEDRVEEDDVEDEWDARSWDDVNLNDKGAFADEEVDSEPELIVKKEIKTGIPAKNAAGATSKTVSKHVAEEIEDRKQAKIGVEAKKKKQDQQQSAASSKPSDANLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADATLKVPGLLVIDTPGHESFNNLRSRGSGLCDIAILVVDIMHGLEPQTKESLDLLKMRNTEFIVALNKVDRLYGWKTCRNAPIRKAMLQQSKDVQNEFNMRLDQIVTEFKEQGLNTALYYKNKEMGETFSIVPTSAISGEGIPDMLLLLVQWTQKTMIEKLTYSDEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVAGMQGPIVTSIRALLTPHPMKELRVKGSYIHHKEIKAAMGIKITAQGLEHAIAGASLYVVKPDDDLEHIKTAALEDVESVLSRIDRSGEGVCVQASTLGSLEALLEFLKTPAVNIPVSAISIGPVHKKDVMKASVMLEKKREYSTILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYMENIKEEKKKESADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGILKIGTPICIPSQDFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDVLKSDYRDELSNEEWKLVVKLKSLFKIQ* 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4410 1300 Pfam Elongation factor Tu GTP binding domain 712 920 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 Pfam Elongation factor Tu domain 2 947 1025 IPR004161 GO:0005525
Psa6g4410 1300 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1300 IPR015760 -
Psa6g4410 1300 Coils Coil 1298 1300 - -
Psa6g4410 1300 Gene3D Translation factors 931 1049 - -
Psa6g4410 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 999 IPR027417 -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 411 511 - -
Psa6g4410 1300 CDD IF2_aeIF5B_IV 1171 1266 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 546 560 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 281 301 - -
Psa6g4410 1300 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1300 - -
Psa6g4410 1300 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 708 924 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 Gene3D - 1050 1156 IPR036925 -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 225 250 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 109 511 - -
Psa6g4410 1300 CDD aeIF5B_II 932 1037 - -
Psa6g4410 1300 CDD IF2_eIF5B 711 921 - -
Psa6g4410 1300 Gene3D Translation factors 1163 1300 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 116 141 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 1 81 - -
Psa6g4410 1300 Gene3D - 702 930 IPR027417 -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 565 585 - -
Psa6g4410 1300 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1033 1162 IPR036925 -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 206 220 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 315 330 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 142 157 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 679 695 - -
Psa6g4410 1300 TIGRFAM small_GTP: small GTP-binding protein domain 713 837 IPR005225 GO:0005525
Psa6g4410 1300 MobiDBLite consensus disorder prediction 525 585 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 679 704 - -
Psa6g4410 1300 MobiDBLite consensus disorder prediction 45 72 - -
Psa6g4410 1300 Pfam Translation-initiation factor 2 1039 1149 IPR023115 -
Psa6g4410 1300 Coils Coil 432 501 - -
Psa6g4410 1300 Coils Coil 367 399 - -
Psa6g4410 1300 SUPERFAMILY Translation proteins 1167 1299 IPR009000 -
Psa6g4410 1300 PRINTS GTP-binding elongation factor signature 712 725 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 PRINTS GTP-binding elongation factor signature 776 786 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 PRINTS GTP-binding elongation factor signature 792 803 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 PRINTS GTP-binding elongation factor signature 828 837 IPR000795 GO:0003924|GO:0005525
Psa6g4410 1300 MobiDBLite consensus disorder prediction 365 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4410 Psa-Chr6 388781629 388791891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4410 1 1300 Eukaryotic Initiation Factors Gene Family AT1G76810 62.900 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4410 K03243 - gmx:100814640 1568.52