Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4401 ATGCTGGGTGACCACTCAGCTCTTTTCGGTGGCGGTGGTGGAGATGCAGTGGCCACATCAACACCCAACATGACGGCGGATGGTGGTGGTGGTGGCGGAGTTGGATCAAATTCTGAAAGTGATATTGAAAGAAGTAGAATTGATGAAGGTGAACGTAGCTTCGGTGGTAACAGGTGGCCGCGACCGGAAACTTTGGCGCTTTTAAGGATACGATCGGACATGGATACAACGTTCAGAGATGCAAGTGTTAAAGGTCCTTTGTGGGATGAAGTTTCAAGGAAGCTAGCAGAACTTGGGTTTCAGAGAAGTGCAAAGAAATGCAAAGAGAAATTTGAAAATGTTTACAAGTACCACAAGAGAACTAAAGATGGTAGAGGTGGAAAATCAGATGGTAAAACTTATAGATTTTTTGATCAATTAGAAGCCCTTGATCATTTTCATAACCACCCTTCAACTTATCAACAACAATATCAACCACAAAACCAATCAAAATCACCACAAATTTCAGCACCAACACAGTCGCAAGCGGTTACAACTGCGATAACAGAATCAACAACAGTACCAATGTCATTGCCACCAGTGATTAACACAACCATTAGTATCCCTCCTCATGTAACTGTTTCATCAATTTCGATGCCTCAAAATAATATTGTAACTACCCAAACCCAAACAATGAATATGATGAACCAAACAGTTTCTTCCATTAATCCTTCAACTAGTTTCCAACCATCAACAACAAACCCTACCACCATCAATCCTCTTCCATCTTTCCCTAATATTTCTACAGATCTATTATCCAATTCCATGGCGAGTTCGTACTCGACTTCTTCAGAAGACACAACGGAAGAAGGATCGCGAAAGAGGAAGCGGAAATGGAAGGACTTTTTCGAGAGATTGATGAAGGAAGTGATTGAGAAACAAGAGGATTTGCAGAAGAGATTCTTGGAAGCGATTGAGAAACGGGAGCAAGAAAAAGTGGCTAGAGAAGAAGCATGGAGAGCACAAGAGATGCTGAGAATCAATAGAGAGAGGGAAATTCTTGCACAAGAAAGATCTATAGCTGCAGCAAAAGATGCTGCAGTTCATGCTCCACCGCCATTGCAACCACCGCCGGTTACTAAGCCGGGCGAACCAATTGTCCCACAGCAGCAATTTGTGATGAATAGAGAAATAGTGAAGTTTGATAATAACGGTGAGAATTTCATGGGACCAAGTCCTTCTCGGTGGCCAAAAGTAGAAGTTGAAGCACTGATAAATCTGAGAACAAGCATGGACAATAAGTACCAAGAGAATGGACCAAAAGGCCCTCTATGGGAGGATATATCTTCAGCAATGAGGAGCTTGGGTTACAATAGGAATGCCAAAAGGTGCAAAGAAAAATGGGAGAATATAAACAAGTACTTCAAAAAAGTGAAAGAAAGTAACAAGAAGAGACCAGAAGATTCAAAGACATGTCCTTATTTTCATCAGTTGGATGCTTTATACAGGGAGAAAGGCAAAGGAGACAATTCCGGTGGCAGCGGCAGCGGCAGTGGTTTGAACCAGGCGGTGAAAGCGGAGAACATGGCCGCTCCGTTGATGGTGAGACCGGAGCAGCAATGGCCACCTCAGCAAGAAGAAAAGAACCGCAGGGAGGAAGAGGATGATATGGATGAAGATGATAGAGATGGAGAAGAAGAAGACATGGATGAAAGTGGTGGCGGTGGTGGTAACTTTGAGATAGTGGCAAGCAAGCCTGCAGTGGGTGCATCAGCTTGA 1758 0.434 MLGDHSALFGGGGGDAVATSTPNMTADGGGGGGVGSNSESDIERSRIDEGERSFGGNRWPRPETLALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGFQRSAKKCKEKFENVYKYHKRTKDGRGGKSDGKTYRFFDQLEALDHFHNHPSTYQQQYQPQNQSKSPQISAPTQSQAVTTAITESTTVPMSLPPVINTTISIPPHVTVSSISMPQNNIVTTQTQTMNMMNQTVSSINPSTSFQPSTTNPTTINPLPSFPNISTDLLSNSMASSYSTSSEDTTEEGSRKRKRKWKDFFERLMKEVIEKQEDLQKRFLEAIEKREQEKVAREEAWRAQEMLRINREREILAQERSIAAAKDAAVHAPPPLQPPPVTKPGEPIVPQQQFVMNREIVKFDNNGENFMGPSPSRWPKVEVEALINLRTSMDNKYQENGPKGPLWEDISSAMRSLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKGKGDNSGGSGSGSGLNQAVKAENMAAPLMVRPEQQWPPQQEEKNRREEEDDMDEDDRDGEEEDMDESGGGGGNFEIVASKPAVGASA* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4401 585 Coils Coil 293 324 - -
Psa6g4401 585 MobiDBLite consensus disorder prediction 499 585 - -
Psa6g4401 585 MobiDBLite consensus disorder prediction 41 56 - -
Psa6g4401 585 CDD GT1 57 122 - -
Psa6g4401 585 Gene3D - 409 470 - -
Psa6g4401 585 Gene3D - 59 120 - -
Psa6g4401 585 CDD GT1 407 472 - -
Psa6g4401 585 MobiDBLite consensus disorder prediction 269 289 - -
Psa6g4401 585 MobiDBLite consensus disorder prediction 545 566 - -
Psa6g4401 585 ProSiteProfiles Myb-like domain profile. 407 465 IPR001005 -
Psa6g4401 585 SMART sant 405 467 IPR001005 -
Psa6g4401 585 SMART sant 55 117 IPR001005 -
Psa6g4401 585 MobiDBLite consensus disorder prediction 1 58 - -
Psa6g4401 585 MobiDBLite consensus disorder prediction 152 177 - -
Psa6g4401 585 ProSiteProfiles Myb-like domain profile. 57 115 IPR001005 -
Psa6g4401 585 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 368 578 - -
Psa6g4401 585 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 26 362 - -
Psa6g4401 585 PANTHER - 26 362 - -
Psa6g4401 585 PANTHER - 368 578 - -
Psa6g4401 585 Pfam Myb/SANT-like DNA-binding domain 57 143 IPR044822 -
Psa6g4401 585 Pfam Myb/SANT-like DNA-binding domain 407 494 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4401 Psa-Chr6 386957670 386961079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4401 51 534 Trihelix Transcription Factor Family AT1G76880 51.607 1.38e-151 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa6g4401 Myb_DNA-bind_4 2.2e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4401 - - gsj:114402550 584.334