Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4399 ATGGATATTAATTCCGGTGAAAATATCATGCCGCCGGCGGTGAACGGCGGCGAGGAAGATGATAAGATGAATATGAATATCAACGGTGGTGGTGGTGGTGGAAATAGGTGGCCCCGCCAAGAAACATTGGCTCTCTTGAAGATAAGATCAGATATGGATGGTGTGTTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTTCAAGGAAACTAGGTGAACTTGGTTATCATAGAAGTTCAAAAAAGTGCAAAGAGAAATTTGAGAATGTATACAAGTACCATAAAAGAACCAAAGAAGGTAGAAGTGGAAAATCAGAAGGAAAAACTTATAGATTTTTTGATGAGTTACAAGCACTTGAGAAAAAAATCACATTCTCTTCTACTTACCCTCCAAAACCACTTCCAAATAATAACACACTCTCATTACCACAAACAACAATGCCTAATGAAACCACAAAAACAATATCACATGTTACAAATATTACTATTCCATCCACAAACCCTACCACACTTATTTCTCCTTCACCACCGCCGCCAACGCCACCACCACAAACAACCAATGCAACAACCGCGACCAACCCTAGTAGCAACAACAATGTTTCATTTTCTTTACCGAACATGAACGTGAACCTATTCTCCACCACAACTACCTCAACTTCTTCTTCCACGGCTTCTGACGAAGACTTGGAAGAGAAGTACAGGAAGAAGAGAAAATGGAAAGACTATTTCAGAAGACTCACAAGAGAAGTGCTTGCGAAACAAGAGGACATGCAAAAGAGATTCTTGGAAGCCATAGACAAACGCGAAAAGGAACACATGGCTCAACAAGATGCTTTGAGAGTTCAAGAAATGGCGAGAATCAATAAAGAACATGAACTTCTTGTCCAAGAAAGATCATCAGCAGCTCAAAAAAACGCCGCGGTTATTACTTTTCTCCAGAAATTGTCCGGACAACCACCACCACAACCGCCGCCACCACCGCCACCACCACCAGCGTCAGAGCTGCCTCGAACTCCGGTATCACAAATACAAACACAGCAACTGGTGATACCAAACAACAACATTGTTGAGATTCTGAGTATGAATAATGGTCACAAAAGTTCTTGCGATGTTGCTTCTCCATCAAGGTGGCCAAAAAGTGAAGTTCATGCTCTAATAAGGATAAGAACAAGTCTAGAACCAAAGTATCAAGAAAATGGTCCAAAAGCACCATTATGGGAAGATATATCAGCTGGAATGAAGAGACTTGGCTACAATAGGAATGCGAAAAGGTGCAAAGAAAAGTGGGAGAATATCAACAAGTACTACAAGAAAATGAAAGAAAGTAACAAACAAAGGCGCGACGATAGTAAGACATGTCCTTATTTTCACGAACTCGAAGCTCTTTACAAAGAAAAGAACAAATTACAGAACCCTTTCGGTTCTAATTCGTTTCATAGTATAAAGTCAAGTGAAATGATGGAGCCATTGATGGTGCAACCAGAACAACAATGGAGACCTCCAACTCAATACGAAGAACCTCACCTGGTGAAGAAGAATAACAACGAAGAGAAAGAGGATGATAACGGTGATGTTGACGATGAAGAAGATGAAAACATGGATGACTACGAAGAAGGAGATAGCATGGAAGAAGATGAAGGCGGCGTTAGCAGCCGTTATGAAGTTGTAACAAATAAACTTCCATCAATGAACACCGTTGGATGA 1710 0.4082 MDINSGENIMPPAVNGGEEDDKMNMNINGGGGGGNRWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLGELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDELQALEKKITFSSTYPPKPLPNNNTLSLPQTTMPNETTKTISHVTNITIPSTNPTTLISPSPPPPTPPPQTTNATTATNPSSNNNVSFSLPNMNVNLFSTTTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTREVLAKQEDMQKRFLEAIDKREKEHMAQQDALRVQEMARINKEHELLVQERSSAAQKNAAVITFLQKLSGQPPPQPPPPPPPPPASELPRTPVSQIQTQQLVIPNNNIVEILSMNNGHKSSCDVASPSRWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMKRLGYNRNAKRCKEKWENINKYYKKMKESNKQRRDDSKTCPYFHELEALYKEKNKLQNPFGSNSFHSIKSSEMMEPLMVQPEQQWRPPTQYEEPHLVKKNNNEEKEDDNGDVDDEEDENMDDYEEGDSMEEDEGGVSSRYEVVTNKLPSMNTVG* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4399 569 MobiDBLite consensus disorder prediction 507 521 - -
Psa6g4399 569 CDD GT1 377 442 - -
Psa6g4399 569 Pfam Myb/SANT-like DNA-binding domain 35 121 IPR044822 -
Psa6g4399 569 Pfam Myb/SANT-like DNA-binding domain 377 464 IPR044822 -
Psa6g4399 569 MobiDBLite consensus disorder prediction 495 569 - -
Psa6g4399 569 SMART sant 375 437 IPR001005 -
Psa6g4399 569 SMART sant 33 95 IPR001005 -
Psa6g4399 569 MobiDBLite consensus disorder prediction 522 546 - -
Psa6g4399 569 Gene3D - 379 440 - -
Psa6g4399 569 Gene3D - 37 98 - -
Psa6g4399 569 CDD GT1 36 100 - -
Psa6g4399 569 ProSiteProfiles Myb-like domain profile. 377 435 IPR001005 -
Psa6g4399 569 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 18 559 - -
Psa6g4399 569 PANTHER - 18 559 - -
Psa6g4399 569 MobiDBLite consensus disorder prediction 166 192 - -
Psa6g4399 569 MobiDBLite consensus disorder prediction 172 187 - -
Psa6g4399 569 MobiDBLite consensus disorder prediction 1 21 - -
Psa6g4399 569 ProSiteProfiles Myb-like domain profile. 35 93 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4399 Psa-Chr6 385409547 385413372 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4399 29 470 Trihelix Transcription Factor Family AT1G76890 52.654 5.86e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa6g4399 Myb_DNA-bind_4 6.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4399 - - gmx:100799041 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4399 6 385409547 385413372 Psa6g4399 6 385409547 385413372 ECH