Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4398 ATGTCGTTCCGGAGTATTGTTCGTGACGTGAGGGATGGGTTTGGAAGTTTATCGAGGCGGAGTTTTGAGGTAAGGCTTCCTGGACATCAGAAGGGGAAGTCGAGAAGTTCGGTCCATGAATTGCAGGATCAGCCTCCTGTTATACAGAATAGCCGGTGGGCGAGTTTACCGCCGGAGCTTCTTCGCGATGTCATTAAGAGATTGGAGTCAAATGAGAATACTTGGCCTAGTCGCAAACATGTGGTTGCGTGTGCTGCGGTGTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTTGGCAGTCTTGAGTACTGTGGGAAGATTACTTTTCCTGTTTCTCTGAAACAGCCCGGGTATAGGGATGGTCCAATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTTTTCCTTTGCCTTAGTCCCGCCTTGCTTGTTGAAAATGGAAAATTTCTTCTCTCTGCTAAACGGACCAGAAGAACGACTTGCACTGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGCAGCACTTACATCGGAAAGCTTAGGTCTAATTTTCTCGGAACCAAGTTCATAATTTATGATACGCAGCCTCCCTATAACAATTCTCAGTTGGCGGCTCCACCTGGACGCAGCAGCCGAAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAACTACAACGTGGCACAGGTCACCTACGAGTTGAATGTCCTCGGTACAAGAGGTCCACGGAGGATGAATTGCACTATGTACTCAATCCCTTCGTCATCCCTCGACCCCGGCGGCGTTGTCCCAGGCCAGCCAGAGCTCATTTCTCGGTCACTCGAGGATTCTTTCCGTAGCATATCCTTTGCCAGATCGATCGATAACTCAACCGAGTTTAGCAGCTGTAGATTCTCGGACATAATGGGAGCTAGCATAATGGGAGATAACAATGAAGACGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAAAACAAGTCTCCAAGATGGCACGAACAGCTGCAATGCTGGTGCCTTAACTTTAGGGGACGCGTGACCGTTGCGTCCGTCAAGAATTTTCAGCTGATTGCTTCAACACAGCCTGCAGCTGTCGCTCCTCGTGCAACAACAGGACCTGCGCCGTCGCAGCCGGCACAATCTGACCATGACAAGATTATTCTTCAGTTCGGTAAGGTCGGCGAGGACATGTTTACAATGGACTATCGTTACCCTCTGTCGGCGTTTCAGGCTTTTGCAATATGTTTGACTAGCTTTGACACAAAACTGGCATGTGAATAG 1314 0.4795 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQKGKSRSSVHELQDQPPVIQNSRWASLPPELLRDVIKRLESNENTWPSRKHVVACAAVCKSWREMCKEIVGSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLAAPPGRSSRRFYSKKVSPKVPSGNYNVAQVTYELNVLGTRGPRRMNCTMYSIPSSSLDPGGVVPGQPELISRSLEDSFRSISFARSIDNSTEFSSCRFSDIMGASIMGDNNEDEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAVAPRATTGPAPSQPAQSDHDKIILQFGKVGEDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4398 437 Gene3D Tubby Protein; Chain A 112 431 IPR025659 -
Psa6g4398 437 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Psa6g4398 437 Gene3D - 48 99 - -
Psa6g4398 437 ProSitePatterns Tub family signature 1. 353 366 IPR018066 -
Psa6g4398 437 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 437 - -
Psa6g4398 437 SUPERFAMILY Tubby C-terminal domain-like 103 437 IPR025659 -
Psa6g4398 437 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 335 352 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 353 369 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Psa6g4398 437 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Psa6g4398 437 PANTHER TUBBY-RELATED 1 437 - -
Psa6g4398 437 Pfam F-box domain 53 99 IPR001810 GO:0005515
Psa6g4398 437 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Psa6g4398 437 Pfam Tub family 114 432 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4398 Psa-Chr6 385137034 385140371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4398 1 437 TUB Transcription Factor Family AT1G76900 68.845 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa6g4398 Tub 1.7e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4398 K19600 - gmx:100810531 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4398 6 385137034 385140371 Psa6g4398 6 385137034 385140371 ECH