Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4387 ATGTCTCACAGGAAGTTCGAGCACCCTAGACATGGTTCACTGGGATTTCTCCCAAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCCTTCCCCAAGGATGACCCAACCAAGCCACCCAAGTTTACTGCCTTTTTGGGTTACAAGGCTGGAATGACCCACATTGTGAGAGAGGTTGAGAAGCCAGGATCCAAGCTTCACAAGAAGGAGACTTGTGAGCCTGTTACAATCATTGAGACTCCTCCAATGGTTGTTGTTGGTGTTGTGGGTTATGTGAAAACTCCACGTGGTCTTCGTACATTGAATACTGTATGGACCCAGCATTTGAGTGAGGAAATTAAGCGTAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCAGCAAGTACTCAAAGCAGTATGAAAGTGATGAAGGCAAGAAGAACATTCAGACTCAGCTTGAGAAACTGAAGAAGTATGCAACTGTTATCCGTGTGTTGGCTCACACTCAGATCAGGAAAATGAAGGGATTGAAGCAAAAGAAGGCCCATATCATGGAGATTCAGATTAATGGTGGCACTATTGCTCAGAAGGTTGACTTTGGATACAACTTTTTTGAGAAGCAGGTTCCTATTGATGCTGTGTTCCAGAAGGATGAAATGATTGACATCATTGGAGTGACAAAGGGTAAGGGTTATGAAGGTGTTGTTACCCGTTGGGGTGTTACCCGTCTCCCCCGTAAAACTCACAGGGGTTTGAGGAAGGTTGCCTGTATTGGTGCATGGCATCCTGCCAGAGTTTCCTTCACTGTTGCAAGGGCTGGACAAAACGGTTATCACCACCGTACTGAGCTGAACAAGAAGATTTACAAGCTCGGCAAATCTGGTGAAGAGACCCATGATGCCCAGACTGAGTTTGATAGGACTGAGAAAGACATCACCCCCATGGGTGGTTTCCCTCACTATGGTATTGTGAAGGAGGACTATCTGATGATCAAGGGAGGGTGTGTTGGTCCCAAGAAGAGGGTCATTACTTTGCGTCAATCCCTTCTTAAGCAGACTTCTCGTCTTGCACTTGAGGATATCAAACTCAAGTTTATCGATACCTCTTCCAAGTTTGGCCATGGTCGTTTCCAGACAACACAGGAGAAACAAAAGTTCTATGGACGCCTGAAGGCTTAA 1170 0.4607 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKFTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYKNWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQINGGTIAQKVDFGYNFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKSGEETHDAQTEFDRTEKDITPMGGFPHYGIVKEDYLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4387 389 MobiDBLite consensus disorder prediction 1 35 - -
Psa6g4387 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Psa6g4387 389 Gene3D - 83 207 - -
Psa6g4387 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Psa6g4387 389 Gene3D Translation factors 44 385 - -
Psa6g4387 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Psa6g4387 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Psa6g4387 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Psa6g4387 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4387 Psa-Chr6 384586248 384589073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4387 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.597 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4387 K02925 - gmx:100819132 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4387 6 384586248 384589073 Psa6g4387 6 384586248 384589073 ECH