Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4386 ATGATTGACATCATTGGAGGGACAAAAGGTAAAGATTATGAAGATGTTGTTACTCGTTGGGGTGTTACCCGTCTCCCCCGTAAGACTCATATGGGTTTGAGGAAGGTTGCTTGTATTGGAGCATGGCATCATGAGACTGTGACAAAAGGTAAGGGTTATCAAGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTCCCTCGTAAGACTCACATGGGTGTGAGGAAGGTTGCTTATATTGGCGTTTGGCATCCTGCCAGAGTGACAAAAATAAGGGTTATGAAGGTGTTGATACTCGTTGGGGTGTTACCAGTCTCCCTTGTAAGACTCTTATGGGTTTGA 339 0.4543 MIDIIGGTKGKDYEDVVTRWGVTRLPRKTHMGLRKVACIGAWHHETVTKGKGYQGVVTRWGVTRLPRKTHMGVRKVAYIGVWHPARVTKIRVMKVLILVGVLPVSLVRLLWV* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4386 112 Pfam Ribosomal protein L3 1 46 IPR000597 GO:0003735|GO:0005840|GO:0006412
Psa6g4386 112 SUPERFAMILY Translation proteins 1 44 IPR009000 -
Psa6g4386 112 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 46 88 IPR045077 GO:0003735|GO:0005840|GO:0006412
Psa6g4386 112 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 45 IPR045077 GO:0003735|GO:0005840|GO:0006412
Psa6g4386 112 SUPERFAMILY Translation proteins 47 89 IPR009000 -
Psa6g4386 112 Gene3D Ribosomal protein L3, domain 3 47 92 IPR044892 -
Psa6g4386 112 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 46 88 - -
Psa6g4386 112 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 45 - -
Psa6g4386 112 Gene3D Ribosomal protein L3, domain 3 1 46 IPR044892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4386 Psa-Chr6 384583319 384585656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4386 1 103 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 50.943 1.94e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4386 K02925 K10999 sspl:121809969 89.7373