Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4379 ATGAATAGGATGATGTCAGGTTTTGTTCCGGTATCTTCTTCTAATTCACCTCGTATGTATTCTTCTAGTGGCTCTGCTTCTGGTTCTAGTTCATGGGTTGGACACAAAAGAGGGCGTGAAGATGATGTTCGTAATGATGCAGCCGTTGGTTCTTCTTCTCTTCAAGATATCACCACAGTTCATAGAAACATTGCTGATTTCAGATTACCTACTTCACATGAAAACTCATCATCAGTGACAGAACAAACTCCAACTAGAGCTACACCTTCAAGTGCAAGCAATGCAACACAATCTAGTGAAGCGGCGTCAACAAATGAGGAAGAAACCGGAGAGATAAGAAGAAGATACCGAGGAGTTCGACAGAGACCATGGGGAAAATGGGCGGCAGAAATTCGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTCGACACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCGAAACTCAACTTCCCTGAAAATGTTACAGCGACTCAACAACGAACTTTTCCGACGACTTCAACCGTATCTGTTTCTCCTGCAACATATTATTCACCTGCGCCACCGCAAATGCAGCCACAACATCAACCACCACCGTTTGGTCAATTTCAAGACTCTTCAGATTTGTTAAGAGACTATTATCATTATTCTCAGATTCTGAAAGGCTCCGGTGATTTTCAAGGACTTGAGCAATGGTTCTATGAACCACAAATGGCGGCGATTCATCTGTCTTCTTCGATGTTATCGCCTTCCCCGTCGCTTTCTTTGTCATCTACTTCATCTTCAACTACATTTTCACCTTCCAGTCAATTATCCTCTGCTTCACTTCCTCTGTTTCCTGGTCAGCAAATGGAGTTCTTCCGACAGCCGGAAGATCACTCTCGTAGTGGAGGATACGGTGGTGGTAGCTCCCATTTACCACCTTCAACATGGTCAGATACTGGTGGCTATCCTCCTCCACCACCACCTTCTTCTGGTTGA 1020 0.4461 MNRMMSGFVPVSSSNSPRMYSSSGSASGSSSWVGHKRGREDDVRNDAAVGSSSLQDITTVHRNIADFRLPTSHENSSSVTEQTPTRATPSSASNATQSSEAASTNEEETGEIRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTATQQRTFPTTSTVSVSPATYYSPAPPQMQPQHQPPPFGQFQDSSDLLRDYYHYSQILKGSGDFQGLEQWFYEPQMAAIHLSSSMLSPSPSLSLSSTSSSTTFSPSSQLSSASLPLFPGQQMEFFRQPEDHSRSGGYGGGSSHLPPSTWSDTGGYPPPPPPSSG* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4379 339 CDD AP2 123 174 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 MobiDBLite consensus disorder prediction 69 105 - -
Psa6g4379 339 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 Gene3D AP2/ERF domain 114 174 IPR036955 GO:0003700|GO:0006355
Psa6g4379 339 MobiDBLite consensus disorder prediction 1 114 - -
Psa6g4379 339 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Psa6g4379 339 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677
Psa6g4379 339 MobiDBLite consensus disorder prediction 1 32 - -
Psa6g4379 339 MobiDBLite consensus disorder prediction 293 339 - -
Psa6g4379 339 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 17 302 - -
Psa6g4379 339 PANTHER DNA-BINDING DOMAIN 17 302 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4379 Psa-Chr6 384350752 384353473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4379 72 223 AP2-EREBP Transcription Factor Family AT5G61890 48.387 1.06e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g4379 AP2 6.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4379 - - lja:Lj5g3v1937400.1 290.426