Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4363 ATGGATACTCATCCTGAAGGTTTGCCTCAATTCATTCACATAAATCAGAATGATTTTTTCATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTGTATGTGAATGCAGGTATAATGAAGATGACCCTTACAGTGCCTGTGCAGATGGGTGTCTAAATGTATTAACCAGCACTGAATGCACCCCTGGTCATTGCCCTTGTGGCATCCTCTGTAAAAATCAGAAATTTCAAAAGTGTGAGTATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGTAAAGAAGCCAAACGCAGATCCCATACATATGAAACTCAAGGTCTTAAGGATGCATATATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAGGGAAGCATTGCCAGATTTATTAATCATTCCTGTCAACCAAATTGTGAAACAAGAAAATGGAATGTCATGGGCGAAATAAGAGTTGGTATATTCGCAAGGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACCGATGTCAAATGCTGATGAACAAAGTGAACAATCCATGGATATTATACTTAAAGTTGAGGAACTATCAGAGGCCACTGCTTTTAATGTTCAACCAGTCGATTCAGTTGAGTTTAAGGATTTAGATGTTCAAAAAATTAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTACTCCCAAGATACTGGACACGACCTTCCACAAAAGAACGCAATGATATCACGCATTCGAAGTAACACTGCAGGAAGAAACTATCGCATTGGACCTAGGTCCATCTCTACCAAAAGATCAAAGGCGCAGAGTGGGGGAAAGTTTAAAAATCGCATCCAGAAGAAAGTTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAAGAAGAGATCTTAGATTATGAGAAAAGAAAAGACAACGCCACAGACACTCTTGATTCTTTATACAACGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATACCCAAGACAGTGTATCTACAACCGTAGCCGAGAAGTGGATTCAGGCATGCTGTCTAAAACTGAAAGCGGAGTTTGATCTTTACTCATCAATTGTTAAAAATGTTGCTTGTACTGCTCAAAAGGCACCTGGTCCAGCAAAAGCAACCGAAGTAGATAACGAAAACAAAAATAAGCTTTTGAGTGATTGA 1446 0.3983 MDTHPEGLPQFIHINQNDFFMRRHKKQKEEDIAVCECRYNEDDPYSACADGCLNVLTSTECTPGHCPCGILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISCKEAKRRSHTYETQGLKDAYIISLNASESIDATRKGSIARFINHSCQPNCETRKWNVMGEIRVGIFARHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDEPMSNADEQSEQSMDIILKVEELSEATAFNVQPVDSVEFKDLDVQKIKTEIVSEDMKLYSQDTGHDLPQKNAMISRIRSNTAGRNYRIGPRSISTKRSKAQSGGKFKNRIQKKVDAKYAAGLLASKEAQEEILDYEKRKDNATDTLDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQKAPGPAKATEVDNENKNKLLSD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4363 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Psa6g4363 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 5 419 - -
Psa6g4363 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Psa6g4363 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Psa6g4363 481 Coils Coil 381 408 - -
Psa6g4363 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Psa6g4363 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Psa6g4363 481 MobiDBLite consensus disorder prediction 460 481 - -
Psa6g4363 481 PANTHER SET DOMAIN PROTEINS 5 419 - -
Psa6g4363 481 SMART set_7 83 206 IPR001214 GO:0005515
Psa6g4363 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Psa6g4363 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Psa6g4363 481 Gene3D SET domain 2 235 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4363 Psa-Chr6 383388178 383393152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4363 66 222 C2H2 Transcription Factor Family AT2G23740 35.955 3.13e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g4363 SET 4.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4363 - - gmx:100804657 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4363 6 383388178 383393152 Psa6g4363 6 383388178 383393152 ECH