Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4362 ATGGATCACGTCACCGAAGCTCTCCTGGCTGCCATAGGCAGCTTCATCGTCGTCACAATCATATTCGCCGCCATCATACTCGTATGTCAGCACCGCAAAACCACCCAATCCCGCCGCAATAACCAGATTCGAACCCGACCACTTCGAAACCCAAATCATTATCCTACCAGCTCAAACTCCCTCCCGGTGGACGCCAGCTGGTCAGAAGACCCCAATCTCAAGATCTCCATGGAAGAACTCTCCCGCGCCACAAATGACTTCTCCCCAAACCTCATCGTCGGCGACGGCAGCTTCGGTCTCGTCTACAAAGCTCGTCTCTCCAACGGCGCAATCGTCGCTGTAAAAAAACTATCCCCCGACGCCTTCCAAGGCTTTCGCGAATTCGCGGCGGAGATGGAAACCCTAAGCAAGCTTCGTCACCAAAACATCGTCAAGATCATCGGTTACTGGGCCTCAGGACCTGAACGGTTACTCGTTTACGAGTTCATCGAAAAAGGAAACCTCGATCAGTGGCTTCACGAATCTTCTTCCTCTACTCGCCAAAACGACAACGTATCAACTTCAATCGATCTAATTCGTTCTCCTTTGCCTTGGGAAACAAGAGTCAACATCATGCGAGGCGTTGCTCACGGGCTTTGCTATTTACACGGGCTAGAAAAGCCCATTATTCATCGTGACATCAAAGCTAGCAATGTGTTGCTGGACTCTGATTTTCAGGCCTATATAGCTGATTTCGGGCTCGCACGTAGGATGGATAAATCACATTCGCACGTGTCAACGCAGGTGGCGGGTACTACTGGTTACATGCCCCCTGAGTATTGGCAAGGGTCTAATGTAGCATACCCGAAAGTAGATGTGTATAGTTTTGGAGTGTTGATGATTGAAACTATGGCGGGCCACAGGCCCAATTTGTCAGTGAAATTAGAAGGAACCGATATTGGGCTTGTTAATTGGGCCAGGAAGATGAAGGAACGGAACACTGAAATGGAGATGCTGGATGTAAATATTCCAAGAGAAGAAGGGTTGAAGGAGGAGAGTGTTAGGGAGTATGTACACATTGCTTGTATGTGCACTAATGAGTTACAGAAAAATAGACCCCAAATGGAAGAGGTTGTCAAATTATTGGATTCAATGCCCCTATAA 1143 0.4829 MDHVTEALLAAIGSFIVVTIIFAAIILVCQHRKTTQSRRNNQIRTRPLRNPNHYPTSSNSLPVDASWSEDPNLKISMEELSRATNDFSPNLIVGDGSFGLVYKARLSNGAIVAVKKLSPDAFQGFREFAAEMETLSKLRHQNIVKIIGYWASGPERLLVYEFIEKGNLDQWLHESSSSTRQNDNVSTSIDLIRSPLPWETRVNIMRGVAHGLCYLHGLEKPIIHRDIKASNVLLDSDFQAYIADFGLARRMDKSHSHVSTQVAGTTGYMPPEYWQGSNVAYPKVDVYSFGVLMIETMAGHRPNLSVKLEGTDIGLVNWARKMKERNTEMEMLDVNIPREEGLKEESVREYVHIACMCTNELQKNRPQMEEVVKLLDSMPL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4362 380 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Psa6g4362 380 ProSiteProfiles Protein kinase domain profile. 87 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4362 380 SUPERFAMILY Protein kinase-like (PK-like) 53 374 IPR011009 -
Psa6g4362 380 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 377 - -
Psa6g4362 380 Gene3D Transferase(Phosphotransferase) domain 1 163 379 - -
Psa6g4362 380 SMART serkin_6 87 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4362 380 Pfam Protein kinase domain 92 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4362 380 PANTHER OS01G0253100 PROTEIN 1 377 IPR045271 GO:0004714|GO:0006468
Psa6g4362 380 MobiDBLite consensus disorder prediction 36 61 - -
Psa6g4362 380 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Psa6g4362 380 CDD STKc_IRAK 93 378 - -
Psa6g4362 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4362 Psa-Chr6 383386573 383387715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4362 15 375 Receptor kinase-like Gene Family AT5G07280 38.919 1.04e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Psa6g4362 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4362 - - lang:109335579 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4362 6 383386573 383387715 Psa6g4362 6 383386573 383387715 ECH