Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4351 ATGTCTTTGGTGGCGAACGAAGAATTTCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGCGATTTGCTAACATTTGCTGTAAGAAGGCTGATATTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCAGAGTTGGATAATTTGATGACAGTGGTTGCAAACCCTCGACAATTCAAGGTACCTGATTGGTTCTTGAATAGAAAGAAGGATTACAAGGATGGTAAATTCTCTCAAGTTGTCTCCAATGGACTTGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAAATCAACAAGGTACCTGATTGGTTCTTGAATAGAAAGAAGGATTACAAGGATGGTAAATTCTCTCAAGTTGTCTCCAATGGACTTGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAAATCAGAAACCACCGTGGATTGAGGCATTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGACGCAGGGGAAAGACTGTTGGTGTCTCAAAGAAGCGATAA 582 0.4313 MSLVANEEFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANICCKKADIDMNKRAGELSAAELDNLMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNGLDMKLRDDLERLKKINKVPDWFLNRKKDYKDGKFSQVVSNGLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4351 193 Hamap 30S ribosomal protein S13 [rpsM]. 12 193 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa6g4351 193 SUPERFAMILY S13-like H2TH domain 13 118 IPR010979 GO:0003676
Psa6g4351 193 ProSitePatterns Ribosomal protein S13 signature. 162 175 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa6g4351 193 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 119 193 - -
Psa6g4351 193 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 117 - -
Psa6g4351 193 ProSiteProfiles Ribosomal protein S13 family profile. 15 186 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa6g4351 193 Pfam Ribosomal protein S13/S18 14 118 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Psa6g4351 193 Gene3D - 1 80 - -
Psa6g4351 193 Gene3D 30s ribosomal protein s13, domain 2 92 120 IPR027437 -
Psa6g4351 193 Gene3D 30s ribosomal protein s13, domain 2 133 183 IPR027437 -
Psa6g4351 193 SUPERFAMILY S13-like H2TH domain 138 189 IPR010979 GO:0003676
Psa6g4351 193 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 117 - -
Psa6g4351 193 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 119 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4351 Psa-Chr6 383180873 383182326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4351 1 193 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 73.575 1.79e-98 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4351 K02964 - ini:109163819 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4351 6 383180873 383182326 Psa6g4351 6 383180873 383182326 ECH