Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4347 ATGACGGAATCGGAGACAGGAACGCCAACGGCGGCTTCCGTGCCGCCGACACCGGAAACACCGGGAGGGCCATTATTCTCGTCGGTGAGAATTGATTCACTTGAACGTGAGTCTTTTGCAATGGGGAGGTGCAACATGTGTATGCCGGGTGCTAAAAGCAATGGTTGCATCGGTGTTCGAATTCCGAGTATCTCTCTCACTCAGAAGATTGGAGCAGAGTTTGTAGGAACGTTCATACTGATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGCAGAAACACTCATGGGAAATGCAGCTTGTGCTGGTTTAACAGTCATGTTCATTATTCTCTCAATCGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATTGCGTTCGCGGCGTTTCGCCATTTTCCATGGGCACATGTTCCCGCCTACATTGCAGCACAAGTCTCTGCGTCGATCTGCGCTTGTTATGCTCTCAAAGTTGTTTACCACCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTAGCATTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTCATTCTCTTGTTCGTTGTCACTGCTGTCGCTACTGATACTCGCGCGGTTGGTGAATTGGCTGGCATTGCTGTTGGAGCTACTGTTTTGCTCAACATTCTCATTTCAGGGCCAACAAGTGGTGGTTCGATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAACTACAAACATATCTGGATATATTTGGTGGCGCCGACGCTTGGTGCGCTTGCTGGTTCTGGAGTTTATACGCTTGTCAAGCTGCGTGACAACGAAGTTGAACCGGTGCAACCGGTTAGAAGCTTCCGTCGCTAG 885 0.4915 MTESETGTPTAASVPPTPETPGGPLFSSVRIDSLERESFAMGRCNMCMPGAKSNGCIGVRIPSISLTQKIGAEFVGTFILIYAATAGPIVNNKYNGAETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKVVYHPFLSGGVTVPTVSIGQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLVKLRDNEVEPVQPVRSFRR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4347 294 MobiDBLite consensus disorder prediction 1 24 - -
Psa6g4347 294 Pfam Major intrinsic protein 63 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 SUPERFAMILY Aquaporin-like 64 283 IPR023271 -
Psa6g4347 294 PANTHER AQUAPORIN NIP2-1 10 291 IPR034294 -
Psa6g4347 294 PANTHER AQUAPORIN NIP5-1-RELATED 10 291 - -
Psa6g4347 294 ProSitePatterns MIP family signature. 125 133 IPR022357 -
Psa6g4347 294 Gene3D Glycerol uptake facilitator protein. 59 288 IPR023271 -
Psa6g4347 294 PRINTS Major intrinsic protein family signature 68 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 PRINTS Major intrinsic protein family signature 107 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 PRINTS Major intrinsic protein family signature 144 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 PRINTS Major intrinsic protein family signature 219 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa6g4347 294 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4347 Psa-Chr6 383022216 383025577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4347 25 294 Major Intrinsic Protein MIP AT4G10380 71.480 4.24e-139 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4347 K09874 - gmx:100804356 506.908