LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4319	ATGGCTGGGAGTTCCGCACCTCCCTCCTCCACGTCTTCTCACAACAATTCAACTTTCTCACCTGATTTCCCTTCCCGAATTCCCCTTACTTCCGATCAGATCAAACACTGCACTGAAGCACTCGCCCTGTTGAAGAACAAACTTCTCAACCCTCACACCGTCTCCCAAGAGTTCTTTCACTTGCAGTCGAATAGGATAACGCTGAGTGAGACGACGAGAAGATGCAATGTTGCTCTTAATTCTGCTAATCTCAGCAAAAATCGATACAGTGATGTTATACCATTTGACAAGAACAGGGTTGTTCTTAAATCGAGTTCTGATTATAGGTCTGAAGCACTGGGGTATATCAATGCAAGCAAAATCTCGACCTCTTCCCCTGGAATTGTGTCCGAGTTTATAGCCACGCAAGGTCCAATGCCACACACTTTTGAGGATTTTTGGGAAATGATGATACAATATCACTGCCCTGCAATTGTGATGCTTACTGGGTTGGTCGACAATTACAAGACGGTGAAGTGTGGAGATTATTTTCAATCTGAAGATAGACCTAGAGAATTCGGGAATATCTCTCTTACATGTAAATGGACAAAAACTACTAAAACTTCACTTGTGTTGCGACATTTGGAGGTGAACCGTAAAGAGGTAGAAGATACACCGTTATCTGTTTTTCATATTCAGTATCCTGAGTGGCCTGACCATGGAGTTCCAAACAATACTTTGGCTGTGCGTGCAATTTGGAAAAGATTATACCACTTGCCACCAAATCTTGGCCCAATAGTGGTGCACTGCAGGTTCATTTGA	801	0.432	MAGSSAPPSSTSSHNNSTFSPDFPSRIPLTSDQIKHCTEALALLKNKLLNPHTVSQEFFHLQSNRITLSETTRRCNVALNSANLSKNRYSDVIPFDKNRVVLKSSSDYRSEALGYINASKISTSSPGIVSEFIATQGPMPHTFEDFWEMMIQYHCPAIVMLTGLVDNYKTVKCGDYFQSEDRPREFGNISLTCKWTKTTKTSLVLRHLEVNRKEVEDTPLSVFHIQYPEWPDHGVPNNTLAVRAIWKRLYHLPPNLGPIVVHCRFI*	267

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4319	266	ProSiteProfiles	PTP type protein phosphatase domain profile.	54	263	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	MobiDBLite	consensus disorder prediction	1	21	-	-
	Psa6g4319	266	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	35	264	IPR029021	-
	Psa6g4319	266	PRINTS	Protein tyrosine phosphatase signature	114	121	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	PRINTS	Protein tyrosine phosphatase signature	132	152	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	PRINTS	Protein tyrosine phosphatase signature	220	237	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	PRINTS	Protein tyrosine phosphatase signature	258	266	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	PANTHER	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	11	263	-	-
	Psa6g4319	266	SMART	PTPc_3	53	266	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	Pfam	Protein-tyrosine phosphatase	83	264	IPR000242	GO:0004725\|GO:0006470
	Psa6g4319	266	Gene3D	Protein tyrosine phosphatase superfamily	28	265	IPR029021	-
	Psa6g4319	266	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE PTP1	11	263	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4319	Psa-Chr6	381728481	381735247	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g4319	32	263	Protein tyrosine phosphatase (PTP) family	AT1G71860	65.517	8.75e-114	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4319	-		-	gmx:548044	384.415