Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4316 ATGGCCTCCTCTCAGGCCCAACATCGCTGTGTCTTCGTTGGGAATATACCGTATGATGCAACGGAAGAACAGCTTATTGAAATCTGCCAGGAAGTTGGTCCTGTTGTTTCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGATTTTGCGAGTATAAGGATGAAGAGACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGATATTAATGGGCGTCAATTACGTGTTGATTTTGCCGAAAACGATAAAGGAAACGATAGAAATAAAGATCAGTTTGTAGGAAAAGATAAGGTTTTTTTTTGGGGGGGAATTGGGAATATACCGTATGATGCAACGGAAGAACAGCTTATTGAAATCTGCCAGGAAGTTGGTCCTGTTGTTTCTTTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCAAAAGGTTATGGATTTTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGATATTAATGGGCGTCAATTACGTGTTGATTTTGCCGAAAACGATAAAGGAAACGATAGAAATAAAGATCAGGGTCGCGGAGGACCAGGAATGACGCCAATTGTTGATCCTCAGAAACAAGTAGGTATCCCAGCTGTCCAAGGGGAATCTGCTCAAGCAGCTCAACACCAACCTATTGGTCTTCATTTTGCCGTAACAGTTGCAGCTGTCATGACTGCAGCTCTTGGTGGTGCTCAGACTGGCATCCAGTCAAATCAAAATGGTTTGCAAAATCAGTCAGCATTGACAAATGATCCTTTAACTTTGCATCTGTCCAAAATGTCCAGGAGCCAGCTGACTGAGATAATCTCTGAGGTTAAGGGAATGGCTACACACAACAAGGAGTTGTCCCGTCAGCTGTTGCTTTCAAGACCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTTGGGATGGTCACCCCCTCAATGCTACAAATGTCAAATCTTAGACAAGGTTCAGATCAAACCTCACAGTTAATAAATGAAGGCCACATTGGTCAGACTCAGCAAACATTGGCTCAAACTGTGTCTGGTCTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGCCAAGCCAATCCAAGGCCTCCACTGCAGCCTAGACTTCCCCTTCAACATCACCAAAGCAACCATTTTGTACAGCCTGGAACAGGGCAGAATAATTTAATGCTTCCTTCCGTACGTCCCCCAACTTTGGGAAGTTTGTCGATTAGGCCTCCAATTCAGCCAGTAAATTCAACTGCGATGAACCAGCAAATGCATGCCTCGTTCCTTCAGCATCCGGTACGTGTTGGAAGCTCAACAGTCTCGCATAATCTTCAAATGGTTCGTCCAGATGCAAGCTTTCAGGCTGACCCCTCCATGTCATCTGGTACTTCCAAGTTATTTAGTAAGGAAGGTGATAGATCTTCCAAAGCTCCCGAGGATTGGACCAAAAATAGTAGTACTTATTCAAACATGTCCGCGGGATTAGAGAATATAGGCACGACTCGTGATATTCCAGAATCCTTCACTCGTCCGTTAAAGCTCACTAGATTGAATGACGGAAGGAAATCCTCTCTTGCTTCTGGGACTTCAGATGTGCCTGTCTCCAAAGGATCATCCCATGTTCTTGGAAGTAGTTTATTACCTGCACCTGCAGTTCCTAAAGCAGAAGCGCGACACCCTGACCAACAATCTTCACAGCTTCCATCTGACGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTAACACCGGAGCAATTGAGTTCCCTGCCACCAGAGCAGCAACAACAGGTCATCCAACTCCAACAAGCTCTTAAGCGAGATCAGATGCAACCTGCATAA 1908 0.4439 MASSQAQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYDINGRQLRVDFAENDKGNDRNKDQFVGKDKVFFWGGIGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYDINGRQLRVDFAENDKGNDRNKDQGRGGPGMTPIVDPQKQVGIPAVQGESAQAAQHQPIGLHFAVTVAAVMTAALGGAQTGIQSNQNGLQNQSALTNDPLTLHLSKMSRSQLTEIISEVKGMATHNKELSRQLLLSRPQLPKALFQAQIMLGMVTPSMLQMSNLRQGSDQTSQLINEGHIGQTQQTLAQTVSGLPPYGQSKLQSGLTPYIQEGQANPRPPLQPRLPLQHHQSNHFVQPGTGQNNLMLPSVRPPTLGSLSIRPPIQPVNSTAMNQQMHASFLQHPVRVGSSTVSHNLQMVRPDASFQADPSMSSGTSKLFSKEGDRSSKAPEDWTKNSSTYSNMSAGLENIGTTRDIPESFTRPLKLTRLNDGRKSSLASGTSDVPVSKGSSHVLGSSLLPAPAVPKAEARHPDQQSSQLPSDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQPA* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4316 635 SUPERFAMILY RNA-binding domain, RBD 6 98 IPR035979 GO:0003676
Psa6g4316 635 SMART rrm1_1 10 83 IPR000504 GO:0003723
Psa6g4316 635 SMART rrm1_1 103 180 IPR000504 GO:0003723
Psa6g4316 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Psa6g4316 635 MobiDBLite consensus disorder prediction 534 560 - -
Psa6g4316 635 Pfam Transcription termination and cleavage factor C-terminal 597 629 IPR026896 GO:0031124
Psa6g4316 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Psa6g4316 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Psa6g4316 635 MobiDBLite consensus disorder prediction 472 490 - -
Psa6g4316 635 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 96 - -
Psa6g4316 635 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 104 630 - -
Psa6g4316 635 Gene3D - 591 634 IPR038192 -
Psa6g4316 635 MobiDBLite consensus disorder prediction 472 510 - -
Psa6g4316 635 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 1 96 - -
Psa6g4316 635 PANTHER CLEAVAGE STIMULATION FACTOR, 3' PRE-RNA, SUBUNIT 2 104 630 - -
Psa6g4316 635 SUPERFAMILY RNA-binding domain, RBD 110 201 IPR035979 GO:0003676
Psa6g4316 635 Gene3D - 251 332 - -
Psa6g4316 635 CDD RRM_CSTF2_CSTF2T 110 182 - -
Psa6g4316 635 CDD RRM_CSTF2_CSTF2T 11 85 - -
Psa6g4316 635 Pfam Hinge domain of cleavage stimulation factor subunit 2 263 330 IPR025742 -
Psa6g4316 635 MobiDBLite consensus disorder prediction 542 560 - -
Psa6g4316 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 184 IPR000504 GO:0003723
Psa6g4316 635 Gene3D - 109 208 IPR012677 -
Psa6g4316 635 Gene3D - 1 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4316 Psa-Chr6 381650705 381656376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4316 110 185 Eukaryotic Initiation Factors Gene Family AT1G49760 32.895 3.59e-06 48.1