Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4302 ATGGAGACAAAGTTATGCGCTTTTGCTTTTATTTCGGAGGTTTTGTTTTTGTTGCTTCTCAATCCACTATGCTTGATTTCTGCTAACATGGAAGGTGATGCTTTACATAATTTACGGACAAATTTACAAGATCCTAACAATGTTCTGCAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTTCATGTAACCTGCAACAATGATAATAGTGTCATTAGAGTGGATTTGGGAAATGCTGCTTTATCTGGCACACTTGTTCCACAGCTTGGTCAACTCAAGAATTTGCAGTATCTGGAGCTTTACAGTAATAACATTACCGGTCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATAAGTTCACTGGCCCTATCCCAGATTCATTGGGCAAGCTGTCGAAGTTGCGTTTTCTCCGGCTTAATAACAACAGCTTGATGGGTCCTATTCCCATGTCACTGACTAATATTTCAGCTCTCCAAGTTCTGGATTTGTCTAATAACCAACTCTCAGGTGTGGTTCCCGATAATGGCTCCTTCTCATTATTCACTCCGATCAGTTTTGCAAACAACTTGAATCTATGCGGACCAGTCACTGGGCACCCTTGTCCAGGCTCTCCACCATTTTCTCCGCCTCCTCCTTTTGTCCCTCCACCCCCAATTTCTGCCCCAGGAACTGGAGGTGCAACTGGAGCGATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCCGCGCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAGCCACAAGAATTTTTCTTTGATGTTCCAGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTCAAGAGGTTCTCACTACGAGAGTTGCAAGTTGCAACCGATACTTTCAGCAATAAAAACATTCTTGGAAGAGGAGGGTTTGGTAAGGTGTACAAAGGACGTTTGGCAGACGGCTCACTGGTTGCTGTCAAAAGATTGAAAGAAGAGCGGACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCCGTGCATAGAAACCTCCTCCGGTTACGTGGGTTTTGTATGACACCAACCGAAAGGTTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCCTGTTTAAGAGAGCGTCCTCCACATCAAGAACCACTAGATTGGCCGACAAGGAAAAGAATAGCTTTGGGATCAGCAAGAGGTCTTTCATATTTGCATGATCATTGCGACCCAAAGATCATTCATCGTGATGTGAAGGCTGCTAACATATTGTTGGATGAGGAGTTTGAGGCGGTTGTCGGGGATTTCGGATTGGCAAAACTTATGGATTATAAGGACACCCATGTGACAACTGCTGTACGTGGTACAATTGGGCATATAGCTCCCGAGTACCTATCTACTGGCAAATCTTCAGAGAAAACTGATGTTTTTGGTTATGGTATCATGCTTCTTGAGCTTATCACTGGACAAAGAGCTTTTGACCTTGCCCGGCTTGCAAATGATGACGATGTTATGCTGCTTGATTGGGTAAAAGGACTTCTGAAAGAGAAGAAGCTTGAAATGTTGGTTGATCCCGATCTTCAAACCAACTACATAGAAGCGGAGGTAGAACAGTTAATCCAGGTTGCGCTGCTCTGCACGCAAGGTTCGCCTATGGACCGGCCTAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGGGACGGGTTGGCAGAAAGATGGGACGAGTGGCAAAAAGGGGAAGTTCTACGGCAAGAAGTGGAACTGGCACCTCATCCCAATTCTGATTGGATTGTTGACTCTACTGAAAATCTACATGCAGTTGAATTATCTGATCTTGTTTACTCTTCCACTACTTATGTTTTCGCTAGACCAGATGGTCTTGATGATGCTTTTATAAAAGTCGGTTTACCCTCTAATTGGGGAACTGTGAGTCCTTTTGAGAGCAAAAGAATACGCGACAAGCGGGGAGTATGGCTGATCATAAATAATGTTGCTGTGGAAAACTTGTCGGCTTCGTCGAATGCCCCTGTCAGATTGCTCGCCATTTACTGCTCTGCTAGAGGTCGTCACCTTTCTCCACTGGATGAGAATTGTGCTTACTTGGATAACCTCTTTGGGCCTATTTTGGAGGAAAAACTGGGTAATCTAGCCAGTATTTATGGTTCAAGTATCCAAACATTTCAAAACTTACCAACACTACTAGATAGCTCGCCGCCGCTGCCGCCGCCGCCTCCGTCGTCCTCATTCTCAGTTGCATTGGATGATGAAGTTCTTCCAGAAGCTAGTGACCCTATTCGCGACTTCAATTCGGACTCTGATTCCGAAATTGAGGAGGTTGATGACTCTGATCACATTTTCACCGGTCATACTGGGGAATTATACGCAGCTTCCTGCAGCCCAACAGATACGACACTGGTGGCAACAGGAGGTGGTGATGATAAAGGATTTCTCTGGCAGATCAACAATGGAGATTGGGCTTCTGAGCTTAATGGTCATACCGATTCTGTATCTAGTTTAGGTTTTAGCCACGATGGAAAGTTTCTGGCAACAGGAAGTTTTGATGGAACAGTTAAAGTCTGGGATGTAGCTGGAAATCTGAAAGGCACACTTGATGGACCTGAAGGGGGCGTTCAGTGGCTTAGGTGGCATCCAAGAGGAAACGTACTCATTGCTGGTTTTGATGATTCCTCCACGGTTTGGATGTGGAATACGGATAATTTTGCCTTCCTTATGTCATTTAATGGTCATGCTAGCAGTGTCACATGTGGTGATTTTACTCCAGACGGGAGAATAATATGTACTGGTTCTGACGACGCAACCTTGAGAATATGGAACCCAAAATCTGGAGAAAGCATTCATGTTGTGCGAGGTCATCCATACCATACCGAGGGAATAACATGTTTAGCAATAAATTCAACTTCAACTATTGCTCTTACTGGTTCCCAGGATGGATCTGTGCATTTTGTGAATATCACTACTGGAAGAGTTGTTAGTACTGTGCCTTCTCATTCAAGTTCCATTGAGTGTGTTGGGTTCGCACCAAGTGGTACTTGGGCTTTAATTGGAGGCATGGATAAAATGACCATCTGGGATATAGAGAATTCCTTAGCCCGAAGCACTTGTGATCACGAGTATGGAGTAACATGTTTGACATGGCTTGGTGCATCATATGTGGCTACTGGATCTATGGATGGAGCTGTGAGATTATGGGACAGTCGCTCAGGAGAATGTGTCAAAATGTTCAGAGGGCACTCTGAAGGCATTCAAACTCTTTCTTTGTCTGCTAATCGCGAGTACCTTGTCTCAGCTTCTTTAGATCATACGGCCCGTGTTTTTGAAGTTAAAGATTTCTGTTAA 3399 0.4472 METKLCAFAFISEVLFLLLLNPLCLISANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNKFTGPIPDSLGKLSKLRFLRLNNNSLMGPIPMSLTNISALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGTGGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKGEVLRQEVELAPHPNSDWIVDSTENLHAVELSDLVYSSTTYVFARPDGLDDAFIKVGLPSNWGTVSPFESKRIRDKRGVWLIINNVAVENLSASSNAPVRLLAIYCSARGRHLSPLDENCAYLDNLFGPILEEKLGNLASIYGSSIQTFQNLPTLLDSSPPLPPPPPSSSFSVALDDEVLPEASDPIRDFNSDSDSEIEEVDDSDHIFTGHTGELYAASCSPTDTTLVATGGGDDKGFLWQINNGDWASELNGHTDSVSSLGFSHDGKFLATGSFDGTVKVWDVAGNLKGTLDGPEGGVQWLRWHPRGNVLIAGFDDSSTVWMWNTDNFAFLMSFNGHASSVTCGDFTPDGRIICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGITCLAINSTSTIALTGSQDGSVHFVNITTGRVVSTVPSHSSSIECVGFAPSGTWALIGGMDKMTIWDIENSLARSTCDHEYGVTCLTWLGASYVATGSMDGAVRLWDSRSGECVKMFRGHSEGIQTLSLSANREYLVSASLDHTARVFEVKDFC* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 1095 1132 IPR001680 GO:0005515
Psa6g4302 1132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Psa6g4302 1132 CDD WD40 842 1127 - -
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 843 876 - -
Psa6g4302 1132 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 625 - -
Psa6g4302 1132 PRINTS G protein beta WD-40 repeat signature 862 876 IPR020472 -
Psa6g4302 1132 PRINTS G protein beta WD-40 repeat signature 946 960 IPR020472 -
Psa6g4302 1132 PRINTS G protein beta WD-40 repeat signature 1072 1086 IPR020472 -
Psa6g4302 1132 SMART WD40_4 1007 1045 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 920 959 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 793 833 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 962 1004 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 1048 1085 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 1088 1127 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 877 917 IPR001680 GO:0005515
Psa6g4302 1132 SMART WD40_4 836 875 IPR001680 GO:0005515
Psa6g4302 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 862 876 IPR019775 -
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 972 1013 IPR001680 GO:0005515
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 843 876 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 1057 1085 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 924 959 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 1010 1040 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 964 1002 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 1089 1126 IPR001680 GO:0005515
Psa6g4302 1132 Pfam WD domain, G-beta repeat 842 875 IPR001680 GO:0005515
Psa6g4302 1132 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Psa6g4302 1132 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Psa6g4302 1132 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 800 842 IPR001680 GO:0005515
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 1054 1094 IPR001680 GO:0005515
Psa6g4302 1132 CDD STK_BAK1_like 310 581 - -
Psa6g4302 1132 Gene3D - 793 1130 IPR015943 GO:0005515
Psa6g4302 1132 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 927 968 IPR001680 GO:0005515
Psa6g4302 1132 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Psa6g4302 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 1072 1086 IPR019775 -
Psa6g4302 1132 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1095 1132 - -
Psa6g4302 1132 SUPERFAMILY WD40 repeat-like 798 1130 IPR036322 GO:0005515
Psa6g4302 1132 SMART serkin_6 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4302 1132 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 13 625 IPR031048 GO:0004675|GO:0005102|GO:0006468
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 927 964 - -
Psa6g4302 1132 SUPERFAMILY L domain-like 32 200 - -
Psa6g4302 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1054 1090 - -
Psa6g4302 1132 Pfam Protein kinase domain 305 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g4302 1132 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4302 Psa-Chr6 381065373 381082859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4302 1 624 Receptor kinase-like Gene Family AT1G71830 88.782 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa6g4302 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4302 K13418 - gmx:100789884 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4302 6 381065373 381082859 Psa6g4302 6 381065373 381082859 ECH