Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4289 ATGGGTACCTCGAATCTTTGCTTTTTTTTCTTCTCTCTGGTGAGTTTGTCTGCTATGGCGGCTGCTAAGGTGGTTCTGATTGGGAATAACATCACTCTCTCCTTCGATGATATTGAAGCTAATTTCTCTCCGTCGGTCAAAGGGTCTGGAGAATATGGAGTCTTATTCTTGGCAGAGCCGCTAGATGCATGTACAGAAGTTACAAATAAAGCTAAACAATTTCCGAATACTAGTTCACCTTTTCTTTTGATGATTAGAGGAGGGTGTAGCTTTGAGGACAAGGTTAGGATGGCACAAAAGGCTGGCTACAAAGCTGCAATAATCTATGACAATGAAGATGGCGGCATCCTAGTTGCAATGGCAGGAAATGCAGCTGGTATAAGAATACATGCGGTATTTATATCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTGACAAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCCATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCTACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTTCTCATGTTCGTGAGTTTCATGGAATGAGTAGCCGCCTAGTGAAAGCAATGCCAAGTTTGATCTTCACTTCTGCTTTGGAAGATAACTGTACATCAAGAACGTGTGCTATCTGCCTTGAAGACTATTGCCCTGGAGAGAAACTCAGGATTCTGCCCTGTTGTCACAAGTTTCATGCTGTCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGCAAACGAGATGCAAGAACGGGTTTGTCTGACCCACCACCTTCAGAATCCACACCTCTGCTGTTATCAACCCCATCCTCTGCGGCGTCCTCTTTCATGTCTTCTATGAGGTCATCATATGCTTCATCTTCAGCAATACAAATTGCTTCACATTCACAATCCGCTTCACGTAACCACTCTTTAGCTAGTACCCCTTTCATGCAGCCATCTCTAAGGTCCTACCGCCAATCCCCCTCTCTTAGCGTCAGCCGTAGCTCTGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCGCACATGAATTCACCGCGTTCCAACGGTTACCCATCTATGTCGTCTCTTAACTCAAGATACTTGTCTTCACATGTTCCAAGTCCAAGCATCGGTTCAGTAAGTTTCCTTGGTTCATCCAGTCATCAGCAACATCCACTCCGTCATAGCGAGTCAGCCGCAAGCTTCTCACCATTTGTGTCCGCCAGCTCCCTCCCGGACTGTTAA 1326 0.4502 MGTSNLCFFFFSLVSLSAMAAAKVVLIGNNITLSFDDIEANFSPSVKGSGEYGVLFLAEPLDACTEVTNKAKQFPNTSSPFLLMIRGGCSFEDKVRMAQKAGYKAAIIYDNEDGGILVAMAGNAAGIRIHAVFISKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCPGEKLRILPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLLSTPSSAASSFMSSMRSSYASSSAIQIASHSQSASRNHSLASTPFMQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSNGYPSMSSLNSRYLSSHVPSPSIGSVSFLGSSSHQQHPLRHSESAASFSPFVSASSLPDC* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4289 441 MobiDBLite consensus disorder prediction 357 385 - -
Psa6g4289 441 CDD PA_C_RZF_like 13 163 IPR044744 -
Psa6g4289 441 MobiDBLite consensus disorder prediction 410 441 - -
Psa6g4289 441 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 365 - -
Psa6g4289 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Psa6g4289 441 SMART ring_2 235 276 IPR001841 -
Psa6g4289 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Psa6g4289 441 Pfam PA domain 81 142 IPR003137 -
Psa6g4289 441 SUPERFAMILY PA domain 81 144 IPR046450 -
Psa6g4289 441 SUPERFAMILY RING/U-box 224 289 - -
Psa6g4289 441 Pfam Ring finger domain 234 277 IPR001841 -
Psa6g4289 441 Gene3D - 19 155 - -
Psa6g4289 441 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Psa6g4289 441 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 365 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4289 21 440 C3H Transcription Factor Family AT1G22670 47.406 2.09e-112 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4289 K15692 - gmx:100791248 619.002