Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4278 ATGACATCAACTCAAATTTCTGAGAGATCATCATCATCAATGGATATGGAATCAAGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTACCTCAACAGGAAAATCAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGACATACAAGATAAATGCAAGCTAGGGTATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAGAAGTATCCAACAGGAACAAGGACTAATAGAGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGAGATAAAGCTGTAACTTCCAAAAATAGAATCATAGGAATGAGGAAAACCCTTGTCTTCTACAAAGGTCGTGCCCCTAATGGAAGAAAAACTGATTGGATCATGCATGAGTATAGGCATCAAACCTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGCATTTAAAAAGCCTAGTCCAAGTCACAGGCCAGGTTATGAACCATGGTATAGCAATCAACAACAGCCACAATATTTCAGAGATGATATTCAACTTCAAACCTACGCAACAACAAGACCTTTATCAATCACAGATCTTTTGCATGAAGGTACAAGTTTTAGTAGTCACCCTTTTAGCAATGATCAACATTTTCTATCAAACCAAAACACTCTTGTTATGGACAACAAACAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAATAGAATGTAGCCAACAACAGCATCACATTAATGGTCTCATCACAAATGAAGAATATTGCAGTGAAGATAGAAGCAATGATAATAATAATAATGGACAAGTGATTGATTGGAAAAGTTTGGACAACTTGTTCACTTCACAGTTTACAGATACAGATAATTACTTTTCACATCAAAATAACTTGCCATTGATGATATCTCATAGCAATAACCAGAATGAGCTACAATCTCAAAATCAAGTTAATAATATCTTAGGATGCTTTCCTGATTCATAA 1038 0.3671 MTSTQISERSSSSMDMESSVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDKCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNQQQPQYFRDDIQLQTYATTRPLSITDLLHEGTSFSSHPFSNDQHFLSNQNTLVMDNKQQLIELPQLDSPTTIECSQQQHHINGLITNEEYCSEDRSNDNNNNGQVIDWKSLDNLFTSQFTDTDNYFSHQNNLPLMISHSNNQNELQSQNQVNNILGCFPDS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4278 345 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
Psa6g4278 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 317 - -
Psa6g4278 345 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Psa6g4278 345 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
Psa6g4278 345 MobiDBLite consensus disorder prediction 1 22 - -
Psa6g4278 345 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 18 317 - -
Psa6g4278 345 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Psa6g4278 345 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4278 Psa-Chr6 379011224 379014266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4278 16 345 NAC Transcription Factor Family AT1G71930 54.783 2.45e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa6g4278 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4278 - - gmx:100811057 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4278 6 379011224 379014266 Psa6g4278 6 379011224 379014266 ECH