Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4254 ATGGAAGATTCAGAAGAAGATGAGCTTCTAAATCTCAGTCTTTCAGTTAACAGAGAAAGAAAAAAGAAGGGAAAAATCATCACAAGAGAAAACATTAACAACCACCACCACAATCACAACCACAATCACAACCACAACAACAACACTTTTTCTATGATTTGTACCAATAGAAACTCCTACGAAGGCTACGAAGGAAAAATCTTCAGACTTCTTCAAATGAGAGAACAAATGCTCCGAAAAAGCACCATCAACGTCGAAGACTCAAACGGTCTTCCATTAATTCACCTTCTTCTCACAACCGCAACTTCCGTCGACGAAAACAACTTCGATTCATCTCTCGAAAACCTAACAGATCTTTACCAAACCGTTTCACTCACCGGCGATTCAGTTCAACGAGTCGTCGCTTATTTTACCGACGGCTTAACCGCGAAACTCCTCACAAAAAAATCACCATTCTACGAAATGTTAATGGAAGAACCAACCATCGACGAAGAGTTTCTCGCATTCACAGATCTCTACAGAGTTTCACCGTATTACCAATTCGCTCATTTCACTGCAAATCAAGCTATCTTAGAATGCTTCGAGAAAGAAGAAGAGAGAAACAACCGCTCAATTCACGTGATCGATTTCGATGTTTCATACGGTTTTCAATGGCCTTCACTGATTCAATCACTCTCAGAAAAAGCTACAAGCGCAAACAGAATCTCGCTCAGAATAACTGGATTCGGTAAGAATTTAAAAGAGCTTCAAGAAACTGAATCTAGGTTAATTAGTTTCTCAAAAAGCTTCGTAAACATTGTTTTTGAATTTCAAGGTTTGTTAAGAGGATCGAGAATTATTAACCTAAGGAAGAAGAAAAACGAAACTGTGGCGGTTAATTTAGTTTCTTACCTAAACAAATTAACTTGTTTATTGAAAATTTCTGACACATTGGGATTTGTTCATTCCCTTAACCCTTCCATTGTGGTTATCGTTGAACAAGAAGGTTCTAAGAATCCTTCTAGAACCTTCTTGTCAAGATTCACAGACACATTGCATTATTTTGCAGCAATGTTTGATTCACTTGATGATTGTTTACCATTAGAGAGTATTGAGAGGTTGAGAATTGAGAAGAAACTTTTCGGTAAAGAGATTAAAACCATGCTTAATAACTATGATATAGATGATGGTGGTGGTGGTGGTGGTGTTGATTGTGCAAAATATGAGAAAATGGAAACATGGAAAGTTAGAATGGAGAATCATGCTTTTGTTGGTATGAAAATGAGTTCAAAGTGTTTGATTCAAGCAAAATTGTTGCTTAAGATGAGCACACATTATTGTCCACTTCAGTTTGAGGAAGAAGGTGGTGGTGGTTTCAGAGTTTCTGAAAGAGATGATGGAAAAGCCATTTCATTAGGATGGCAAAATAGGTTTTTGCTTACTGTGTCAGCATGGAAATCACTTTGA 1446 0.3728 MEDSEEDELLNLSLSVNRERKKKGKIITRENINNHHHNHNHNHNHNNNTFSMICTNRNSYEGYEGKIFRLLQMREQMLRKSTINVEDSNGLPLIHLLLTTATSVDENNFDSSLENLTDLYQTVSLTGDSVQRVVAYFTDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQAILECFEKEEERNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSANRISLRITGFGKNLKELQETESRLISFSKSFVNIVFEFQGLLRGSRIINLRKKKNETVAVNLVSYLNKLTCLLKISDTLGFVHSLNPSIVVIVEQEGSKNPSRTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKLFGKEIKTMLNNYDIDDGGGGGGVDCAKYEKMETWKVRMENHAFVGMKMSSKCLIQAKLLLKMSTHYCPLQFEEEGGGGFRVSERDDGKAISLGWQNRFLLTVSAWKSL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4254 481 ProSiteProfiles GRAS family profile. 84 479 IPR005202 -
Psa6g4254 481 PANTHER OSJNBA0084A10.13 PROTEIN 24 479 - -
Psa6g4254 481 Pfam GRAS domain family 93 479 IPR005202 -
Psa6g4254 481 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 479 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4254 Psa-Chr6 375502537 375504385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4254 101 478 GRAS Transcription Factor Family AT3G54220 32.990 1.54e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa6g4254 GRAS 2.8e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4254 - - gmx:100809458 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4254 6 375502537 375504385 Psa6g4254 6 375502537 375504385 ECH