Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4240 ATGAATCCGACTGGAAGTTTGTGTGCTAACAACTGGGCAAGATCGTCTTCCTTAGTCCCTCCTGGGAGTGGATTACCGACAAATCTGTCCTCGGATCCTTCCTCTTTCTACGGCATCGGTATTGAAATGCCTTTCAAAGAAATCAACGAACCCGCTCGAACTCAGTCTGTGATTCCAGGTGAATCTAACGAAGATATTAAGATCACTGATCAGGAGACTAGTAAACTTCAAGATTGGGATCCTAGTGCGATGTTGAATAACCTTTTGTTCCTGGAAGAAAAGATTCATCAGCTTCAGGAGGTAGTGCATTTGATTGCTAATAAGAAGTGCCAACCTTTTGAACAACCTCGTGAACTCGTGACTCAAGAACAGCAACTTGTTACAGCTGATTTAACATCGATTATTGTTCAGTTGATATCTACTGCAGGTAGTCTTCTCCCTTCTGTTAGGAACAGTCTGACAGACACAAGTCCATTGGTAGGACAGCTTAGTCAGCTTCGCGGAATTAACCTTCCTTTTGGGACAGGCACAAGTAATGGTGTTCAGCCACAGAATAATGTCGGAAATAAATTGTTTGATCAGTCCATTCATAAAGATGTACCTAATAATTGCGAAATGGAGCAAAACCATAATATGGAAGAACATGAACATAAAGATGAAGAAGATATGGAAGAGGGAGAGAATCTTCCACCTGGTTCGTATGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCCCACACACATTTCTGTACAATATGCGGCAAGGGGTTCAAGAGGGATGCGAATCTCCGTATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCGGCAGCCCTTGCAAAACCACATAAAGAAACTGGGTCTGAGCCGAAGCTTATCAAGAGGTATTCGTGCCCTTATGGTGGCTGCAAGCGTAACAAAGATCACAAGAAATTTCAGCCTCTGAAAACTATTTTATGTGTGAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCATACCAAGAAGTTTTCAGTCATTGCAGATCTCAAAACCCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCATGTGGCACAACGTTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGAAGACAATAAAGGTCTCGCCGAGCCACCTGATCGATGTGTCACCAATGAAAATAGCGCTATGGTAGGGAGCATGAACTTCAGTTTTGGATCAAATCCTTCAAATGAAAATGGAGTTGACAACATCATGGACGTGAAAGGCAATATTGATGATCCTATCAATTACTTCTCATCTTTGAACTTTGAAGGCTGTAACTTTGGTGCGTTCAATGAATTCTCTCAACCATCATTCGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGCCGAGTTCGTTTAACTATGCTCCTAAATCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1509 0.4188 MNPTGSLCANNWARSSSLVPPGSGLPTNLSSDPSSFYGIGIEMPFKEINEPARTQSVIPGESNEDIKITDQETSKLQDWDPSAMLNNLLFLEEKIHQLQEVVHLIANKKCQPFEQPRELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRNSLTDTSPLVGQLSQLRGINLPFGTGTSNGVQPQNNVGNKLFDQSIHKDVPNNCEMEQNHNMEEHEHKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEDNKGLAEPPDRCVTNENSAMVGSMNFSFGSNPSNENGVDNIMDVKGNIDDPINYFSSLNFEGCNFGAFNEFSQPSFEDSEGSFSFLMPSSFNYAPKSGGESCSDNL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4240 502 Gene3D Classic Zinc Finger 234 303 - -
Psa6g4240 502 SUPERFAMILY beta-beta-alpha zinc fingers 248 275 IPR036236 -
Psa6g4240 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 486 - -
Psa6g4240 502 SMART c2h2final6 337 359 IPR013087 -
Psa6g4240 502 SMART c2h2final6 299 332 IPR013087 -
Psa6g4240 502 SMART c2h2final6 250 272 IPR013087 -
Psa6g4240 502 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Psa6g4240 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 486 IPR044300 GO:0010044|GO:0010447
Psa6g4240 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4240 Psa-Chr6 374643039 374646582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4240 218 500 C2H2 Transcription Factor Family AT1G34370 70.588 7.60e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4240 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4240 - - gmx:100170687 809.675