Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4233 ATGGAGGAAGATGATTATGAGGAGTATGTGCCTGTGGCAAAGCGTCGCGCTATGGAAGCTCAGAAGATTCTACAACGCAAAGGGAAGGCCTCTGCTGTAATTGACGATGATTCGGAGAAATTACGAGTGGTTGAAATGAAGCCGAGTCTACTTGTTAAGGCATCACAGCTGAAAAAAGACCAACCTGAGATCAGTGTTACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGATAATTTGTCTGATAAGAAAACACTTATGTCTGTTCGCGAATTAGCTAAGGGGATTACTTATACTGAACCTTTGCCTACTGGGTGGAAGCCTCCTTTGCATATACGAAGGATGTCGAAGAAGGATTGTGAATTTATTCAGAAACAGTGGCATATAATAGTTAACGGTGAAGAAATTCCACCTCCAATTAAGAATTTTAAGGACATGAGGTTTCCGGATCCGATTCTGAAGATGTTGAAAACTAAGGGGATTGTGCAGCCAACACCGATTCAGGTGCAGGGTCTTCCTGTTATTTTATCTGGGCGTGATATGATTGGGATTGCTTTCACGGGTTCGGGGAAAACTCTGGTCTTTGTGCTTCCTATGATCATGATGGCAATGCAGGAGGAGATTATGATGCCTTTAGTTCCCGGGGAAGGTCCGTTTGGTCTGATTATTTGTCCGTCGAGGGAATTGGCAAGGCAAACTTATGAAGTGATTGAACAATTCTTGTTGCCTTTGAAGGAAGCTGGATACCCAGAGCTTAGGCCTCTGCTTTGTATCGGTGGAATTGATATGAGATCGCAGCTTGAGATTGTCAAGAAGGGGGTTCATTTAGTTGTTGCTACGCCCGGGAGGTTGAAGGATATGTTGGCAAAGAAAAAAATGAATCTTGATAACTGCAGGTATTTGACGTTAGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTCGATCACTTTAAAGCTCAAAGGCAAACTCTCTTATTTTCTGCTACTATGCCAACCAAAATTCAAAACTTTGCTAGAAGTGCTTTGGTGAAACCTATTATCGTCAATGTGGGGCGTGCCGGGGCGGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAACAAGAGGCAAAAATAGTTTACCTCCTTGAGTGCCTACAGAAAACGCCACCTCCTGTTCTGATTTTTTGCGAGAACAAGGCTGATGTCGATGACATACATGAGTATCTTCTCTTGAAAGGAGTGGAAGGTGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCATTTAAGGCTGGAAAGAAAGATGTCTTGGTTGCAACTGATGTTGCATCTAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTACGACATGCCAGCTGAAATAGAAAATTATGTCCATAGGATTGGACGTACCGGAAGATGTGGTAAAACTGGTATAGCGACAACGTTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACACCTATTGCAAGAAGCAAAACAAAGGATTCCTCCAGTTTTAGGTGAGCTGAATGATCCAATGGAAGATACTGAAGAAATCACAGGCATAAGTGGTGTCAAGGGATGTGCGTATTGTGGCGGGCTTGGGCATCGTATCCGTGATTGTCCTAAATTAGAACATCAGAAGAGTGTGGCAATTGCAAATAATAGAAAGGATTATTTAGTATTGTGGCGGGCTTGGGCATCGTATCCGTGA 1767 0.4233 MEEDDYEEYVPVAKRRAMEAQKILQRKGKASAVIDDDSEKLRVVEMKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIDNLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSKKDCEFIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPLVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHLVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEGVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLGELNDPMEDTEEITGISGVKGCAYCGGLGHRIRDCPKLEHQKSVAIANNRKDYLVLWRAWASYP* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4233 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 567 - -
Psa6g4233 588 SUPERFAMILY Retrovirus zinc finger-like domains 545 566 IPR036875 GO:0003676|GO:0008270
Psa6g4233 588 SMART ultradead3 161 372 IPR014001 -
Psa6g4233 588 Pfam Helicase conserved C-terminal domain 381 488 IPR001650 -
Psa6g4233 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Psa6g4233 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 503 IPR027417 -
Psa6g4233 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 357 IPR014001 -
Psa6g4233 588 SMART helicmild6 407 488 IPR001650 -
Psa6g4233 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 528 IPR001650 -
Psa6g4233 588 Pfam DEAD/DEAH box helicase 166 345 IPR011545 GO:0003676|GO:0005524
Psa6g4233 588 Pfam Zinc knuckle 545 561 IPR001878 GO:0003676|GO:0008270
Psa6g4233 588 CDD DEADc_DDX41 153 358 IPR044113 GO:0000398|GO:0003724|GO:0005524
Psa6g4233 588 SMART c2hcfinal6 545 561 IPR001878 GO:0003676|GO:0008270
Psa6g4233 588 Gene3D - 367 529 IPR027417 -
Psa6g4233 588 CDD SF2_C_DEAD 369 497 - -
Psa6g4233 588 Gene3D - 110 361 IPR027417 -
Psa6g4233 588 ProSiteProfiles Zinc finger CCHC-type profile. 546 561 IPR001878 GO:0003676|GO:0008270
Psa6g4233 588 Coils Coil 499 519 - -
Psa6g4233 588 PANTHER BNAA06G38640D PROTEIN 8 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4233 Psa-Chr6 374341614 374343380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4233 114 523 Eukaryotic Initiation Factors Gene Family AT3G13920 29.298 1.30e-54 189