Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4222 ATGGGTTGTTATTATTATTCCATATTATGTGTTGTTTTGTTTTTATCCATTGGAAATTCTTTGGCTTCTTCAATTGAAGATCAAAAGAGAGATAAGATTAGTTGGTTACCAGGGCAACCAAAGAATGTTGGATTTGAGCAGTATTCAGGTTATGTGACTGTGAATGAACAGAATGGAAGAGCACTGTTTTACTGGTTGACTGAAGCTCCACTGAGCCGTGGACCCAATTTAAGGCCACTGGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCTATTGCTTATGGTGCTTCTGAAGAAATTGGCCCTTTTCATATTAAGTCTGATGGCAAATCACTTTACTTGAATCCTTATGCTTGGAACAACTTGGCAAATATACTTTTTCTTGATTCTCCGGCTGGGGTTGGTTTTTCTTATTGTAATAAAACAGCAGATCTGTACACATTTGGTGACCAGAAAACAGCTGAGGATGCGTATGTTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAACATAGAGATTTCTACATTGCCGGGGAAAGTTACGCAGGTCATTATGTTCCTCAATTGGCTCAACTTGTTTACCAGAGAAATAAGGGAATCAATAATCCAGTTATCAATTTTAAGGGATTTATGGTTGGAAATGGTGTTACCGATGATTATCATGATTATGTTGGAACATTTGAGTACTGGTGGACGCATGGTTTAATTTCCGATTCCACGTATAAAATTCTAAGAATTGCATGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTATGCAGGCTCTTAGACTCGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACACCGCCTTGTAACAACACGTCGTCGCTTTCACGCAGCTTGAACGGTCGTTATCCATGGATGTCAAGAGCGTATGATCCGTGTACCGAAAGGTATTCCAATTTGTATTTCAACCGTCCAGATGTTCAGAAGGCACTTCATGCTAATGTAACAGGGATTCCATATACATGGAAAACATGCAGTGATATTGTTGGGAATTTTTGGACCGATTCGCCTTTGTCTATGCTTCCGATATATCACGAACTTATCAATGCTAGTCTACGAATATGGGTATTCAGTGGAGACACTGATGCTGTAGTTCCACTAACCGCCACTCGATATTCTATAGACGCGTTGAAGCTTCCAACCGTCGTAAATTGGTATCCTTGGTATAACAGTGGCAAGGTTGGTGGATGGAGCCAAGTTTATAAAGGGCTCACGTTCGTGACAGTACGAGGCGCTGGGCACGAGGTTCCTCTTCATAAGCCTCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGTACATGCCATCATCATCAAGTTAA 1383 0.402 MGCYYYSILCVVLFLSIGNSLASSIEDQKRDKISWLPGQPKNVGFEQYSGYVTVNEQNGRALFYWLTEAPLSRGPNLRPLVLWLNGGPGCSSIAYGASEEIGPFHIKSDGKSLYLNPYAWNNLANILFLDSPAGVGFSYCNKTADLYTFGDQKTAEDAYVFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLAQLVYQRNKGINNPVINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYKILRIACDFGSSQHPSVQCMQALRLAVAEQGNIDPYSIYTPPCNNTSSLSRSLNGRYPWMSRAYDPCTERYSNLYFNRPDVQKALHANVTGIPYTWKTCSDIVGNFWTDSPLSMLPIYHELINASLRIWVFSGDTDAVVPLTATRYSIDALKLPTVVNWYPWYNSGKVGGWSQVYKGLTFVTVRGAGHEVPLHKPREAFILFRSFLENKYMPSSSS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4222 460 Gene3D - 358 451 - -
Psa6g4222 460 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Psa6g4222 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 422 439 IPR033124 GO:0004185
Psa6g4222 460 PANTHER CARBOXYPEPTIDASE 13 457 - -
Psa6g4222 460 Pfam Serine carboxypeptidase 37 452 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 Gene3D - 311 347 - -
Psa6g4222 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 422 435 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 SUPERFAMILY alpha/beta-Hydrolases 29 456 IPR029058 -
Psa6g4222 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 457 IPR001563 GO:0004185|GO:0006508
Psa6g4222 460 Gene3D alpha/beta hydrolase 27 289 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4222 Psa-Chr6 373017509 373020703 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4222 321 453 Calmodulin-binding Proteins AT2G22960 30.657 3.82e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4222 K16297 - gmx:100805722 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4222 6 373017509 373020703 Psa6g4222 6 373017509 373020703 ECH