LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g4218	ATGGGAAAAGAGAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCAGGCAAGTCGACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAACTGGAATTTCAAGGATGGACAGACCCGGGAGCATGCTCTACTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCAACACACCCAAATACTCAAAGGCTAGGCCCTGTGGACAATATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTGTCATCAAACCTGGAATGGTCGTCACTTTTGCTCCAACTGGGCTACAAACTGAAGTCAAGTCTGTGGAGATGCACCATGAAGCTCTCACTGAGGCCCTTCCCGGTGACAATGTTGGGTTCAATGTTAAGAATGTCGCTGTTAAGGATCTCAAGCGAGGTTTTGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTTACATCTCAAGTGATCATCATGAATCACCCTGGTCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCATACCTCCCACATTGCTGTAAAGTTTGCTGAGCTTCTTACCAAGATTGACAGACGTTCTGGTAAAGAGATTGAAAAGGAGCCCAAATTCCTGAAGAATGGTGATGCAGGTATTATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCCGAATATCCTCCACTTGGTCGTTTTGCTGTGAGGGACATGCGACAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGGAGAAGAAGGAACCCACTGGACCTAAGGCCACTAAGTCAGCCTTGAAGAAGAAGTGA	978	0.4714	MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFNWNFKDGQTREHALLAFTLGVKQMICCCNKMDATHPNTQRLGPVDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLQTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPTGPKATKSALKKK*	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g4218	325	Pfam	Elongation factor Tu domain 2	126	191	IPR004161	GO:0005525
	Psa6g4218	325	CDD	EF1_alpha_II	108	198	-	-
	Psa6g4218	325	Pfam	Elongation factor Tu GTP binding domain	6	43	IPR000795	GO:0003924\|GO:0005525
	Psa6g4218	325	SUPERFAMILY	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	204	307	IPR009001	-
	Psa6g4218	325	CDD	EF1_alpha_III	201	304	-	-
	Psa6g4218	325	Pfam	Elongation factor Tu C-terminal domain	199	307	IPR004160	-
	Psa6g4218	325	Gene3D	Translation factors	201	308	-	-
	Psa6g4218	325	PANTHER	ELONGATION FACTOR 1-ALPHA	59	92	-	-
	Psa6g4218	325	PANTHER	ELONGATION FACTOR 1-ALPHA	1	57	-	-
	Psa6g4218	325	PANTHER	ELONGATION FACTOR 1-ALPHA	96	324	-	-
	Psa6g4218	325	PANTHER	TRANSLATION FACTOR	59	92	-	-
	Psa6g4218	325	PANTHER	TRANSLATION FACTOR	96	324	-	-
	Psa6g4218	325	PANTHER	TRANSLATION FACTOR	1	57	-	-
	Psa6g4218	325	SUPERFAMILY	Translation proteins	109	238	IPR009000	-
	Psa6g4218	325	Gene3D	-	58	103	IPR027417	-
	Psa6g4218	325	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	3	127	IPR027417	-
	Psa6g4218	325	Gene3D	-	1	57	IPR027417	-
	Psa6g4218	325	Gene3D	Translation factors	107	194	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g4218	Psa-Chr6	372556405	372558452	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g4218	1	58	Eukaryotic Initiation Factors Gene Family	AT5G60390	91.379	3.87e-28	111

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g4218	K03231		-	gmx:110008577	474.552