Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4209 ATGGAGAATAATGGTCGAGTATGCACCATTTGTAATAGGTTCTTTTCTAATGGGAAGGCTTTGGGAGGCCACATAAAGTCTCACTATTCCAAATTACCAATCCCTCCAAAACCCCCATTAAATAGCCAAGTACCTGAATATTCAGTAGAGTCAATCCAACATCCAAGTCACTTTATCACCACATCTTCCTTATCAATTGTCAATGCAAGAAATAACTCTATACACAATCTTAGATCTTTGAAAAGAAACTTCTATTATAACCTGGAAAACTTTGATAGGAAAACTGTGTTTGAGTTTTATCCAAAAAATCCAACTGGAAAAAGATCAAAACGCAGTCGAAGACAATTCAGTGTGGTTGAAGAAAAAGAAAAGAATACTCAATTTAGTGTGGTTGGAGAAAGAGGAGTGAATTCACAATTTCACGTGGCTGTAGAAAATGAAGAGAGTACACAATTTCAATTAGTATATGATGATTTTGATATGGAAGCTGCTAAAACCCTAGTTGTTATTTGTGCGAAAGAATGGCAACAAATCGAAGAGAAATACTATCAAAAGAAGGCACAAATTTGTGAAAATGACACCATTGGATCTAAGTGTGATATTTGTGATGAAGTGTTTCAATCTTATCAAGATATTTCTGGGCATGATAAAATGCATAAGGAAATTAATAATCTATCTGAAGAAGTTGGTGTAAGTGGAAACGAAGATGATGTTGTAAATGCATAA 726 0.3416 MENNGRVCTICNRFFSNGKALGGHIKSHYSKLPIPPKPPLNSQVPEYSVESIQHPSHFITTSSLSIVNARNNSIHNLRSLKRNFYYNLENFDRKTVFEFYPKNPTGKRSKRSRRQFSVVEEKEKNTQFSVVGERGVNSQFHVAVENEESTQFQLVYDDFDMEAAKTLVVICAKEWQQIEEKYYQKKAQICENDTIGSKCDICDEVFQSYQDISGHDKMHKEINNLSEEVGVSGNEDDVVNA* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4209 241 Pfam C2H2-type zinc finger 198 221 - -
Psa6g4209 241 Pfam C2H2-type zinc finger 7 30 - -
Psa6g4209 241 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Psa6g4209 241 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Psa6g4209 241 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 239 IPR044303 GO:0006355
Psa6g4209 241 SMART c2h2final6 6 28 IPR013087 -
Psa6g4209 241 SMART c2h2final6 197 219 IPR013087 -
Psa6g4209 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Psa6g4209 241 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4209 Psa-Chr6 371000577 371001302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4209 8 230 C2H2 Transcription Factor Family AT1G02030 24.123 1.52e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4209 zf-C2H2_6 2.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4209 - - mtr:MTR_3g008310 274.248