Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4184 ATGAGGTGTTCCTGTCTTCATCTATACATAAAAAAGTTGGAACTCTTTCTCACTCACCACTCTCTCTCTCTCTCTCTTCTCTCTCCCACAACATCACTCTCTCTTCTCTCTCTCCCTTTTTCTCATCCACCATTCTCAATCAACAACAATCTTCTTCTAAACATGTTTGTAGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGCTTAGATTCTCAACTATGGCACGCCTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTTCCACAAGGTCACGCAGAGCACGCTCATGGCAAAGTGGATTTCACCAAAACGCGCGTTCCGCCGCTTATCCTTTGTAGAATCTCTGCTATGAAATACATGGCTGATCCTGATACTGATGAAGTCTATGTCAAAATGAGATTAACCCCTTTACGAGAAAACGAGTTGGATTCAGAACAAGATTGTTTCCTCGGAAACAATGGCTTAGAGGGTCAAGAAAAGCCAGCTTCTTTTGCGAAGACGTTAACACAATCTGATGCCAACAATGGTGGAGGTTTCTCTGTTCCGAGATACTGTGCTGAGACTATTTTTCCGAGATTGGATTACTCTGCAGAACCACCTGTTCAAACGATTATCGCTAAGGATATGCATGGACAGTGTTGGAAGTTTCGGCATATCTATAGAGGAACACCGAGGAGACATCTTTTGACTACTGGATGGAGTAATTTCGTGAATCATAAGAAGCTTGTTGCTGGTGATTCGATTGTGTTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGGAGGGCCAAGAAAGGAGGAATTGGCGGTGGAACGGATCAGTTTTCCAATTCTTCTGGTAATTGGAACCGTGTATCACCTTTGTTTGGTGGTGGTTTCTTGGGTGGAAATGAGAATAATAGAAAAAGCGATTATTTGATAGGAAAAGTTGCTTCTGAGTCTGTTGTTGAAGCTGTGAACTGTGCTGTTAATGGAAGATCTTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGTTTCTTCTGTGAAATCCGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCATTTGAAACTGAAGATTCTTCTAGAATCAGTTGGTTTATGGGTACTATATCTTCTGTTCAAGTTCAAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCGGATTTACTTCAAAATGTGAAATGTGTGAACCCTTGGTTAGTTGAGCTAGTTTCAAACATGCCGAATTTCAACCTCTCTCCATTCACGCCACCGAGAAAGAAACCGAGGTTTATCCAAGATCCATATTTTCATCTCATAAACCAACTTCCAATGCCAACAACGACATCATCATCATCGTCGCCGTCATTCTCCAACATTAATCTTCTCAATTACGCAAACTCGTCTCTCTGTAACATTCAAGATTCTACTACGACTAATAGTTATTCTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACAAAATAACCAATCTGATTTTCACTTCAACAAGCTTCACCATGACATGTTTCTTAGTAATCTGTCGCTGTCAAGATTCGATCAACAACAAACTGTTATTAGGCCCTACAAGAGCATCAACAACAATACTAAGAACACTGTCGACTTGTCTTGCTTGTTGAGTGTGGGAAATTCCGGTCAAAGTTTTAAGGAAGTTTCCAATATTGAAGCAAAAGCACCCCACAAACACATTTTGTTGTTTGGAAAACTCATTCAAACCGAAGACAACAGCAACGGCTCGAATATTTCAAAGAGTGGTTCTTTATCTGACGGAACTTGTTTGAAAACATCGAATGTTTCTTCTTCTGAACCGGTTGAGAATTCTTCCGATGGAGGGTCACCTTGGTATAAGGATCAACAACATAAGACCGATATTGTTGGAACAGAAAATGTTACAACATTGTGCATGGCTTCATAA 2013 0.4069 MRCSCLHLYIKKLELFLTHHSLSLSLLSPTTSLSLLSLPFSHPPFSINNNLLLNMFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFTKTRVPPLILCRISAMKYMADPDTDEVYVKMRLTPLRENELDSEQDCFLGNNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSGNWNRVSPLFGGGFLGGNENNRKSDYLIGKVASESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTTTSSSSSPSFSNINLLNYANSSLCNIQDSTTTNSYSASSIQGARHAQFGQNNQSDFHFNKLHHDMFLSNLSLSRFDQQQTVIRPYKSINNNTKNTVDLSCLLSVGNSGQSFKEVSNIEAKAPHKHILLFGKLIQTEDNSNGSNISKSGSLSDGTCLKTSNVSSSEPVENSSDGGSPWYKDQQHKTDIVGTENVTTLCMAS* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4184 670 CDD B3_DNA 171 272 IPR003340 GO:0003677
Psa6g4184 670 Pfam Auxin response factor 328 411 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa6g4184 670 MobiDBLite consensus disorder prediction 627 648 - -
Psa6g4184 670 SUPERFAMILY DNA-binding pseudobarrel domain 165 273 IPR015300 -
Psa6g4184 670 MobiDBLite consensus disorder prediction 627 655 - -
Psa6g4184 670 SMART B3_2 172 274 IPR003340 GO:0003677
Psa6g4184 670 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
Psa6g4184 670 Gene3D - 170 274 IPR015300 -
Psa6g4184 670 PANTHER AUXIN RESPONSE FACTOR 16 61 663 - -
Psa6g4184 670 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Psa6g4184 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa6g4184 670 Gene3D - 365 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4184 Psa-Chr6 368426146 368429232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4184 55 649 B3 DNA Binding Superfamily AT4G30080 54.146 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa6g4184 B3 6.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4184 - - mtr:MTR_1g094960 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1631 6 88612673 88616721 Psa6g4184 6 368426146 368429232 ECH
Psa6g4184 6 368426146 368429232 Psa6g4184 6 368426146 368429232 ECH