Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4179 ATGGTTGGACCAAACTTCATGGACGAGATAGACTGTGGTAGCTTCTTTGACCACATCGACGACCTGCTTGATTTCTCCGTCAACGACGTTGATGCCACCGCCGCTTCCTTGTCCACCGTCACCTCCGCCGCAAACTGTAACTCACTGGCGAGTATTTGGCCGAATGAGTCTGACTCGTTTCCTGCCTCTGACTCAGTGTTTTCTGGAAACAGTCCTGACCTCTCGGTGGAGCTCTCTGTTCCGTATGAAGACATTCTTCCATTGGAATGGCTGTCCACTTTTGTGGAGGACTCATTTTCTGAAGGGAGTCTCACAATGAAGAAAGTGGAGCAACCACCATCATCATGTGTGACCACTAAGGAGGATTCTGTGCATAACCAATTCCAGACATCGAGTCCTGTTTCTGTCCTTGAAAGCAGCAGTTCCTCCTCTGGCGGAAAGACGACGACAGCAGCAGGGATTTACATCCCTGTGCCTTGTGGACGTGCACGCACCAAGCGTCCACGTCCTGCAACTTTCAACCCTCGTTCCGCCATGCAGCTTATTTCCCCTACTTCCTCTTTTGTTGGGGAGAATGTGCAGGCTAATGTTATCTCTACCAAGACGGGGTCTTCGGATTTTGACAATTTTGCCGAGTCTCAAATTGTGGCCAAGAAACCAAAGCTGCCTTCTGGAGAATCTAAGAAGAAAAAGAAGATCAAGATGCCACTTCCTGCTGCTCCTTCTGACAGCGGCGATCAGAATGGTTCGCTACCTGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAATGGAGGGCAGGTCCATTGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTTCGCTACAAGTCAGGCCGGCTTTTCCCTGAATACCGTCCTGCTGCCAGTCCAACTTTTTGTCCTTCATTGCACTCCAATTCTCACAAGAAGGTCATTGAAATGAGAACAAAGGATATCGATAGCTCTGGTTTTGAATCACATTCAGCTGCCTCTCCTGAACTCATTCCAAACACTAACAGCATTCTCGCCATGGAATACATTTGA 1053 0.4872 MVGPNFMDEIDCGSFFDHIDDLLDFSVNDVDATAASLSTVTSAANCNSLASIWPNESDSFPASDSVFSGNSPDLSVELSVPYEDILPLEWLSTFVEDSFSEGSLTMKKVEQPPSSCVTTKEDSVHNQFQTSSPVSVLESSSSSSGGKTTTAAGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSFVGENVQANVISTKTGSSDFDNFAESQIVAKKPKLPSGESKKKKKIKMPLPAAPSDSGDQNGSLPVRKCMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVIEMRTKDIDSSGFESHSAASPELIPNTNSILAMEYI* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4179 350 PIRSF Txn_fac_GATA_plant 3 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Psa6g4179 350 ProSitePatterns GATA-type zinc finger domain. 256 281 IPR000679 GO:0006355|GO:0043565
Psa6g4179 350 Gene3D - 253 300 IPR013088 GO:0006355|GO:0008270
Psa6g4179 350 PANTHER GATA TRANSCRIPTION FACTOR 1 350 - -
Psa6g4179 350 ProSiteProfiles GATA-type zinc finger domain profile. 250 286 IPR000679 GO:0006355|GO:0043565
Psa6g4179 350 PANTHER GATA TRANSCRIPTION FACTOR 8 1 350 - -
Psa6g4179 350 MobiDBLite consensus disorder prediction 218 249 - -
Psa6g4179 350 Pfam GATA zinc finger 256 289 IPR000679 GO:0006355|GO:0043565
Psa6g4179 350 CDD ZnF_GATA 255 302 IPR000679 GO:0006355|GO:0043565
Psa6g4179 350 SMART GATA_3 250 300 IPR000679 GO:0006355|GO:0043565
Psa6g4179 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 254 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4179 Psa-Chr6 367957499 367962517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4179 13 321 C2C2-Gata Transcription Factor Family AT1G08010 35.647 1.66e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa6g4179 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4179 - - gmx:100816641 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4179 6 367957499 367962517 Psa6g4179 6 367957499 367962517 ECH