Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4175 ATGATCTGTTGCTGTAACAAGATGGATGCAACTACACCCAAATACTCAAAGGCTAGGTATGATGAAATCGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAATCCTGAAAAAGTCCCATTTGTTCCCATTTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCTACCCTTCTGAGGCCCTTGACAATATTCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGATTACCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTGTCATCAAACCTGGAATGGTTGTCACTTTTGCTCCAACCGGTCTGCAAACTGAGGTCAAGTCTGTGGAGATGCACCATGAAGCTCTCACTGAGGCCCTTCCCGGTGACAATGTTGGGTTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTTACATCTCAAGTTATCATCATGAATCACCCTGGTCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCATACCTCCCATATTGCTGTAAAGTTTGCTGAGCTTCTTACCAAGATTGACAGACGTTCCGGTAAAGAGATTGAAAAGGAACCCAAATTCCTGAAGAATGGTGATGCAGGTATTATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGGAGAAGAAGGAACCCTCTGGAGGACCTAAGCCCACTAAGTCAGCATTGAAGAAGAAGTGA 906 0.4603 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLRPLTIFNEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLQTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGGPKPTKSALKKK* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4175 301 Gene3D Translation factors 176 283 - -
Psa6g4175 301 PANTHER TRANSLATION FACTOR 1 300 - -
Psa6g4175 301 Gene3D Translation factors 82 169 - -
Psa6g4175 301 PANTHER ELONGATION FACTOR 1-ALPHA 1 300 - -
Psa6g4175 301 CDD EF1_alpha_III 176 279 - -
Psa6g4175 301 Pfam Elongation factor Tu domain 2 101 166 IPR004161 GO:0005525
Psa6g4175 301 CDD EF1_alpha_II 83 173 - -
Psa6g4175 301 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 179 282 IPR009001 -
Psa6g4175 301 SUPERFAMILY Translation proteins 84 213 IPR009000 -
Psa6g4175 301 Pfam Elongation factor Tu C-terminal domain 174 282 IPR004160 -
Psa6g4175 301 Gene3D - 1 79 IPR027417 -
Psa6g4175 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4175 Psa-Chr6 367742814 367745833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4175 1 290 Eukaryotic Initiation Factors Gene Family AT5G60390 91.724 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4175 K03231 - ncol:116251104 570.081