Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4163 ATGGGCAATGTTGAAATCCCTAATTGGCTTGAGGAGTTGCCACTGGCACCTGAATTTCGACCTACAGATACTGAATTTTCTGACCCTATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAACTTTGGGATATGCAAGATTATCCCACCCTTGCCCAAACCTTCAAAAAAATATGTCTTTTCTAATTTGAACAAGTCCCTCTTGAAGCGTCCCGAATTGGTTCCAGATAACAGTTCATTAGGCGTTGGTAATTCTTGGAAATCAGGTTCTTGGGATAGTAGTACTGATGGGATATCGCGAGCAGTGTTTACTACAAGGCAACAAGAAGTGGGGCAGAATGTGAAAAAAACCAAAGGGACAGATCAGAAGCCACTGTCATGTGTTCATAAGCATGTATGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTCGAGTCTAAATCAAAATCTTTTGCAAGAAGCATTCTAGGTATGGCGAAGGATGTTTCTCCACTGGTTATAGAGGCTATGTTCTGGAAGGCAGCTTCAGAGAAGCCAATATATGTAGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGGAGAATCACAGGGTCAGTTTTATCGAAGTCATAGAAGGCAACGAAAAAGAACTTATTATAAGAGTAGAGTAGATAGCTCTGTTTGTAAACAAACTGAAATGGGTGATGTAAAAGACACACAGAATGACCAGTCTAATGGCGTTGCTACTTCAAGTCTTGCTGTCTCATTTTTAGAGATGTCTAAATCAGCAATGACAACATCTATAGAAAATGAAGCGTCACAGTCTTCTAAGGAGAGGACTTCAGATGCCAACATTGATATGCAAGGCACTTCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATTTGCAAGTTATTGCCCGCGCTTCAGGCTCACTAACGCGTTTCATGCCGGATGATATTCCCGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTATCTTCACACTGGCTCATCAAAGACTTGGTATTCTGTTCCTGGAAATTATGCTTTTGCTTTTGAGGAAGTCATACGCACAAAGGGTTATGGTGGTGATATTGATCAATTTGCTGCTTTGAAACTATTGGGCGAGAAAACAACTCTTTTAACACCTGAAGTAGTTGTTGGATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGCGAAGCTGCTAACTTTGGGACTCCACAATGGCTTGGTGTAGCTAAAGAAGCTGCTGTGCGTAGAGCTACAATGAATCATCTTCCCATGCTCTCCCATCAGCAACTGCTTTACTTGCTTACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTATTACCTGGTGTTCGCAGTTCTCGTCTCAGAGACCGCCAGAAAGAAGAAAGAGAGATTCTAGTAAAGCAGGCTTTTATAGAAGATATGCTTCAGGAAAACAAACTGCTATCCATTCTTCTTGGAAAAGAAGCTACTAAACAAGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGTCAGCTGCCGGATTTAGCTTCTACTTCTGCTTGGATATACTGTCTCCATTGTCTTCTTGATGATATGAGTTTGTACATGGAGAATCTGACCGATTTATATGATGGTTGTGATGATGGCCTTCCATGTCACTTCCAAACTGACTCAGGAGCATTGGCTTGTGTGGGCTGTGGAATACTTGGTTTTCCATTTATGACATTGATACAGCCAACTGAAAAATCGATAATGGAACTTCTTTCTGATAATCATCATCTAGTTGAAGATTCTTCCCTGAACTCTGTTGCCTCCCTTCACAGTGTAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCTTTGGCAGAGGATTCACAGAATCAGTCATTGATCAAATGCAATAAATATTGGAACACCTCCAGTAAATTTATGAAGCCACGGATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAACTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATAAAAAGTGATTTTGATTATACTGAGATTGCAATAGATATTGCATCCCAAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAACTTGATGAATATGAAGACTGGACATCTAAACTAGGCCTTAACCTGCGGTTTTGTCAACCAAGCGCGGTTCGTGAATCCCATGAAAAGTTCAAAAATGCATCAGCTGTTTTGAGTGGGGATCATTATAAATGTGTTTCTGAAGATGAGCTTAACACAGACAATTTCAGGAGTGCTTGTGCTTTGTCACATGGTTCTGCTTCTGCTGCAATATCATCTCCAATGCATCATGAAATCCAGAATGTCGAAGCTCCCACTAGTATGAGCTTGAATACCAATGTGTCAGAAATATGTGGCAAAGAGTGCAAGGACTGTCAGGACAAGAAATATTCTCGCTCTCTTACAAGTGGAATAGACGGAAATATTGATGTGTTAGGAAACAACCAAATTACAGAAGCATTTGTCGTTAATAGCAATTGTAATGGCATAGACTTGAATGGTGAAGGGTATCCAGAATATCAGTCTGCATGCAAAAGCAACAGTGAAGCTGTTTTATCGGCTTCATTTAAAAACCAGTCTGCTCTTGCCACTGTGGATGGAAGTTTTGAAAGTCCAAAGAATACTTATGCTGAAGAAAGAGTAAACAGTTCTATGTCATTAAAAGTGACAACTGAGGGAGAAAGTAAGTCTTTGAATGAAACGGACAAGGAACTTCTAAATGATGATAAAACAATAAGTGAACATGCTCCTATTGCAGACGTTAGTGAAGTTTCAAGAGAGGTTTATGCTTCTGCAGACTTCCATGATACAATAAGCTTGGATGGTGAAATGCAGCATGGACAGGTTGGAGAAAGGGGTAAAATAGAAACAATTCAGTCCACTCCTATTTCAGCAAAACAAATGTGTGAATCTACAAGTGGGGAATATGTTGAGGGGTTGCAAGATGAAGCGGCTTTAGAGCCTGCAGAGCAGTCTTTGATCCAAAATAAGAGTAGAACTAATGAGGAACCTGTTTCCAGTATTGTTGCAAAAGGCAACAATAGAAGTGTATCTATATCAGAAATAGTGTGTTCTGAAGTTTCAGCAGAAACCTATCCCGAAGAAGACTCATGTATTCAATTTGTTCCGAGTACAGAAACAGAAATGGAAATCCAACCCATTAATAGAATTGATGAGGAACTTTCTGTATCAACTCAGGAATGTTCTCAGACCGAGAAAAAGACCTGTGGTGGAGAAAACATAAATGGAAGCGAAGTTGATTTGTCACAAGATGATGGGGAGATGGAAAGCTGTGACTTGACTACAGCAGCTCCCAGATCAAATCCCGCAAAGAAAAAAAAGAGGAAAGTGGAAGAACCTGCAAAGAACCAAATTGATTGCGATGACTTTATAAGAAGTCCATGTGAGAGGTTGAGACCAAGAGCTGGGAAGATTGCCACCACAAGCAAAAATGGAGGGGTCATCAGCCAAAATGACGAGGAAAATCCGGTAGCTAAAAGGACACGGAAACTACCCGAAGCTTCAGTTCCTCGCAAGGATAAAAAAGTCAATGTTAAAAGGCCGCACAAGTGCGACCTTGATAATTGCCGTATGCGTTTCTCGACAAAGGCTGAGTTACAGTTGCACAAACGTAACCTTTGCCCACATGAAGGGTGTGGTAAGAAATTCAGTTCCCACAAATACGCACTAATTCACCAGCGCATTCATGAGGATGATAGGCCTCTGAAATGCCCATGGGAAGGTTGTTCCATGTCATTCAAGTGGGCATGGGCAAGAACAGAGCATCTAAGGGTGCATACCGGGGAGAAGCCTTATCAATGTAAGGTCGAAGGTTGCGGCCTTTCTTTCAGATTTATATCAGATTATAGCAGGCACAGGCGAAAAACAGGACATTATGTGAAATCTCCCGCTTGA 4134 0.4105 MGNVEIPNWLEELPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELVPDNSSLGVGNSWKSGSWDSSTDGISRAVFTTRQQEVGQNVKKTKGTDQKPLSCVHKHVWQSGEVYTLEQFESKSKSFARSILGMAKDVSPLVIEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTYYKSRVDSSVCKQTEMGDVKDTQNDQSNGVATSSLAVSFLEMSKSAMTTSIENEASQSSKERTSDANIDMQGTSGWKLSNSPWNLQVIARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNYLHTGSSKTWYSVPGNYAFAFEEVIRTKGYGGDIDQFAALKLLGEKTTLLTPEVVVGSGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGVAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLQENKLLSILLGKEATKQVVLWNADLLPDSGKYRQLPDLASTSAWIYCLHCLLDDMSLYMENLTDLYDGCDDGLPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLSDNHHLVEDSSLNSVASLHSVVSRDLSVSELALAEDSQNQSLIKCNKYWNTSSKFMKPRIFCLEHAVQIVEMLQSKGGANVLITCHSDYPKIKAHARAVAEEIKSDFDYTEIAIDIASQENLALIDLAIDGEELDEYEDWTSKLGLNLRFCQPSAVRESHEKFKNASAVLSGDHYKCVSEDELNTDNFRSACALSHGSASAAISSPMHHEIQNVEAPTSMSLNTNVSEICGKECKDCQDKKYSRSLTSGIDGNIDVLGNNQITEAFVVNSNCNGIDLNGEGYPEYQSACKSNSEAVLSASFKNQSALATVDGSFESPKNTYAEERVNSSMSLKVTTEGESKSLNETDKELLNDDKTISEHAPIADVSEVSREVYASADFHDTISLDGEMQHGQVGERGKIETIQSTPISAKQMCESTSGEYVEGLQDEAALEPAEQSLIQNKSRTNEEPVSSIVAKGNNRSVSISEIVCSEVSAETYPEEDSCIQFVPSTETEMEIQPINRIDEELSVSTQECSQTEKKTCGGENINGSEVDLSQDDGEMESCDLTTAAPRSNPAKKKKRKVEEPAKNQIDCDDFIRSPCERLRPRAGKIATTSKNGGVISQNDEENPVAKRTRKLPEASVPRKDKKVNVKRPHKCDLDNCRMRFSTKAELQLHKRNLCPHEGCGKKFSSHKYALIHQRIHEDDRPLKCPWEGCSMSFKWAWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDYSRHRRKTGHYVKSPA* 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4163 1377 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1366 - -
Psa6g4163 1377 ProSitePatterns Zinc finger C2H2 type domain signature. 1347 1371 IPR013087 -
Psa6g4163 1377 SUPERFAMILY beta-beta-alpha zinc fingers 1325 1368 IPR036236 -
Psa6g4163 1377 SMART c2h2final6 1262 1284 IPR013087 -
Psa6g4163 1377 SMART c2h2final6 1345 1371 IPR013087 -
Psa6g4163 1377 SMART c2h2final6 1285 1309 IPR013087 -
Psa6g4163 1377 SMART c2h2final6 1315 1339 IPR013087 -
Psa6g4163 1377 MobiDBLite consensus disorder prediction 1233 1257 - -
Psa6g4163 1377 ProSiteProfiles JmjC domain profile. 289 458 IPR003347 -
Psa6g4163 1377 Gene3D Classic Zinc Finger 1286 1311 - -
Psa6g4163 1377 SUPERFAMILY Clavaminate synthase-like 290 454 - -
Psa6g4163 1377 SMART cupin_9 289 458 IPR003347 -
Psa6g4163 1377 ProSiteProfiles Zinc finger C2H2 type domain profile. 1345 1376 IPR013087 -
Psa6g4163 1377 MobiDBLite consensus disorder prediction 1235 1257 - -
Psa6g4163 1377 Pfam jmjN domain 17 50 IPR003349 -
Psa6g4163 1377 ProSitePatterns Zinc finger C2H2 type domain signature. 1317 1339 IPR013087 -
Psa6g4163 1377 SMART JmjN_1 15 55 IPR003349 -
Psa6g4163 1377 Pfam JmjC domain, hydroxylase 323 441 IPR003347 -
Psa6g4163 1377 ProSiteProfiles Zinc finger C2H2 type domain profile. 1315 1344 IPR013087 -
Psa6g4163 1377 ProSiteProfiles Zinc finger C2H2 type domain profile. 1285 1314 IPR013087 -
Psa6g4163 1377 ProSitePatterns Zinc finger C2H2 type domain signature. 1287 1309 IPR013087 -
Psa6g4163 1377 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1366 - -
Psa6g4163 1377 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Psa6g4163 1377 MobiDBLite consensus disorder prediction 1173 1192 - -
Psa6g4163 1377 Gene3D Classic Zinc Finger 1312 1340 - -
Psa6g4163 1377 Gene3D Cupin 9 462 - -
Psa6g4163 1377 SUPERFAMILY beta-beta-alpha zinc fingers 1286 1322 IPR036236 -
Psa6g4163 1377 Gene3D Classic Zinc Finger 1341 1371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4163 Psa-Chr6 367123980 367133457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4163 1 779 C2H2 Transcription Factor Family AT5G04240 56.897 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4163 JmjC 4.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4163 - - adu:107467970 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4163 6 367123980 367133457 Psa6g4163 6 367123980 367133457 ECH