Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4157 ATGCCTAGTTGGAGATTGCTTCTATGGTTGATTTTCACATTGAGTTTGTTCTTTGGGAAGAAGACGCATTGTCAAGAAATGAATGATTATGACCAACTCGATAATCCTGCTGTTCTTCCCCTTATTACTCAGCTTGTTTATAGCAGAATTTCCAATTTGACTTCAATTCTCAGTCACCAGATTAGTGCAGACTCCAATTTCTGTGTCAAAGATCCGGATTCTGATTGGAATCAAGCCTTTAATTTTTCATCGGATTTGGGCTTTTTGGCTTCTTGCATTAAAAAGACTAAAGGAGATATTACAAATCGTTTGTGTACAGCCGCAGAAGTGAAGTTTTACTTAAATAGTTTAATGGATAGATCTACAAGTGCCAATTATTTAAAGCCTAATAAGAACTGCAATTTAACCTCGTGGGTTCCTGGTTGCGAGCCCGGATGGGCATGTAGTGTTCCCCCTAGCCAGAAGATTGACCTTAAAGATTCAAAGGATGTGCCCGCTAGAACTTCAAATTGTCGAGCATGTTGCGAAGGCTTCTTTTGTCCTCACGGTATCACATGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACACTCAATAAAACGACTGGCATATGTGAACCATATCTTTATCAGCTACCTCCAATGCAGCCAAACCATAGCTGTGGAGGAGCAAATATTTGGGCTGATTTTAGTAGCAGTAGCGAAACATTTTGTTCAGCGGGATCCTTTTGTCCAACAACCACCACAAAATTTCCTTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCTGAGAAAAGATGTTTCAAGCTAAGTTCATGCAATTCAAACACAGCAACCCAAAACATGCATGCGTATGGAGTTATGCTCATTGCAGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTAGCAAAATCAAGAGAAGCAGCAGCTAGAAGTGCAAGGAAAACTGCAAATGCACACCAAAGATGGAAACTTGCAAAGGATGCTGCTAAGAAAGGTGCATCTGGGCTGCAAGCTCAATTATCACGGAAATTCTCTCGTAAGAAGGATGAAGAAACTCTTGAAAAGGTTAAAATTTTAAACCAGGAGACTTCTGAAATAGATGTTGAATTGTTTCCACATTCACAACCTTCAAGCATGGTTGCAAGTTCGTCTGCCGTGCCAACTGAAAAGGGGAAAAATCCAAGTGGGTTAATGCATATAGTACATGAAATTGAAAATGATCCGCATGTTGACCACAATCCCGATACAAGAAAAGAAACTAGATATAAAAGCGCTACAAAGGAAAAACAACCACATACTCATACACAAATTTTCAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTCAGCAACAAGAAAATAAGAACCTTACCTTCTCGGGAGTACTAAAAATGGCTACAAATACTGAGAAAATTAAGAGGCCTTTTATTGAGATTTCTTTCAGAGATCTAACTCTCACACTGAAATCTCGAAACAAACATATATTGAGAAATGTTACCGGGAAAATCAAACCTGGCCGTATCACCGCTGTCATGGGTCCGTCAGGAGCTGGCAAGACAACATTTCTTTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTGGTTACTGGTTCAATTCTTATAAATGGAAGGCACGAATCAATTCACTCGTTTAAGAAAATTATTGGCTTTGTTCCACAAGATGATGTAGTTCATGGAAACTTAACAGTGGAAGAAAATCTCTGGTTCAGTGCTCAGTGCAGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCCGTAGTTGGAACTGTGGAAAAGCGAGGGATCTCTGGAGGACAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGTTAGATGAGCCAACATCTGGCCTGGATAGTGCATCATCTCAGCTTCTTCTAAGAGCATTAAGACGTGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAAGATGTTTGATGACTTGATACTTCTGGGTAAAGGCGGTCTCATGGTCTATCATGGATCTGCCAAGAGAGTTGAAGAATACTTTTCAGGTCTCGGGATTAATGTTCCGGAGCGGATAAACCCTCCAGATTACTATATTGACATTTTGGAGGGCATAGCAGCACCTGCTGAAAGTTCAGGACTCAGTTATGAGGATCTACCAGTTAAATGGATGCTTCATAATGGATATCCAATACCTCTTGATATGAGGCAGCATGCAGCACAGTTTGATATGCCGCAGAGTGTAAATCCACTTAATGACATAGACTCCAATGGCTCAGGTGATGTTGGAAAAACGTTTGCTGGAGAATTATGGAATGATGTGAGAAATAATGTGGAAGTGCGAGGGGAAAAGATAAAACTTAATTTTTCAAAATCCAAGGATTTATCTGACCGGAAAACTCCTGGTGTATTCAAGCAATATAAGTACTTTCTTATACGGGTTGGGAAGCAGCGATTGCGAGAAGCTAGGATCCAGGCCGTAGATTATCTTATTTTATTACTTGCTGGAGCCTGCTTAGGATCAATTACCAAATCGAGCGATCAAACATTTGGAGCATCCGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCGGCATTGAGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGTTTGGCTTATTTTCTCTCAAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTCTACCTATCTATGTTCTATTTCTTAACCAATCCCAGATCTACTTTTGCAGCTAATTATATTGTGTTGCTTTGTCTTGTATACTGTGTCACCGGCATAGCATACGCATTGTCCATAGTTTTTGAACCTGGCGCGGCTCAGCTGTGGTCAGTACTTCTTCCAGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATCTTAAAGGCCATAGCTAACTTATGTTACTCTAAGTGGGCTTTACAAGCATTGGTCATTGCAAATGCTGAAAGGTATCAAGGAGTATGGCTCATAACTCGTTGCGGTTCGCTTCTAAAAAGCGGGTATAATCTTCATGATTGGAGTCTCTGCTTATCCATGCTCATTCTTATGGGTGTAATCGGTCGCGCAATAGGGTTTTTCTGTATGGTCACCTTCAAAAAGAAGTAA 3321 0.4065 MPSWRLLLWLIFTLSLFFGKKTHCQEMNDYDQLDNPAVLPLITQLVYSRISNLTSILSHQISADSNFCVKDPDSDWNQAFNFSSDLGFLASCIKKTKGDITNRLCTAAEVKFYLNSLMDRSTSANYLKPNKNCNLTSWVPGCEPGWACSVPPSQKIDLKDSKDVPARTSNCRACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGICEPYLYQLPPMQPNHSCGGANIWADFSSSSETFCSAGSFCPTTTTKFPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGVMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSARKTANAHQRWKLAKDAAKKGASGLQAQLSRKFSRKKDEETLEKVKILNQETSEIDVELFPHSQPSSMVASSSAVPTEKGKNPSGLMHIVHEIENDPHVDHNPDTRKETRYKSATKEKQPHTHTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKIKRPFIEISFRDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVTGSILINGRHESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLMVYHGSAKRVEEYFSGLGINVPERINPPDYYIDILEGIAAPAESSGLSYEDLPVKWMLHNGYPIPLDMRQHAAQFDMPQSVNPLNDIDSNGSGDVGKTFAGELWNDVRNNVEVRGEKIKLNFSKSKDLSDRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFLTNPRSTFAANYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALVIANAERYQGVWLITRCGSLLKSGYNLHDWSLCLSMLILMGVIGRAIGFFCMVTFKKK* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4157 1106 Gene3D - 497 734 IPR027417 -
Psa6g4157 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 721 IPR027417 -
Psa6g4157 1106 CDD ABCG_EPDR 497 723 - -
Psa6g4157 1106 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 1103 - -
Psa6g4157 1106 Pfam ABC transporter 516 668 IPR003439 GO:0005524
Psa6g4157 1106 ProSitePatterns ABC transporters family signature. 640 654 IPR017871 GO:0005524
Psa6g4157 1106 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 740 IPR003439 GO:0005524
Psa6g4157 1106 SMART AAA_5 525 717 IPR003593 -
Psa6g4157 1106 Pfam ABC-2 type transporter 697 1106 IPR043926 GO:0140359
Psa6g4157 1106 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 32 1103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4157 Psa-Chr6 366323019 366329548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4157 499 718 Calmodulin-binding Proteins AT2G36910 26.141 7.33e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4157 - - lang:109341040 1861.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1014 3 95806133 95811368 Psa6g4157 6 366323019 366329548 ECH
Psa6g4157 6 366323019 366329548 Psa6g4157 6 366323019 366329548 ECH