Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4153 ATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAAGATCTGGCGCAAATGGCATCGAAAGGTCAATGTAAACCAGAAACGTTATGCTGTTGTCTCAGCCATCGTTGCATCCGCAGTGCCTTCCCTTGTTCTTGCTCGTGGCCACCGGATCGAGTCAGTCCCGGAGTTTCCTCTCGTCGTCGGTGATTCTGCTGAGGGAGTCGAAAAGACTAAGGAAGCGATCAAGCTTCTGAAACACATTGGAGATTTCCCTGACGCCGAGAAAGCAAAGAACAGACATGGAATCCGTCCAGGAAAAGTTATGCAAGGTTGTTGCTTGTTGCTGTTAAAGTACAAAGACCAGGCGTTCAAGCTTCTGGATTTGCTTGGTCTTTGCTTTAGTTTGGATATTGCTTCTGGTCCTAAAGCTTTGACTTCGGGAGTTGGGAAATTGCTTTTGCCGGTTAATAAGAAAATGGATAAGAAGAAGACAATATTCAGCTGCTTTTCGAAATACAGGAAAAGGTCGTTGAAACCTGATGATGTTTTGAAGTTTGGTTTGATCTATGCTGGTGCTCAGAAGAACGTAGGTCCCTCTGGTGTAACAGTTATGATTGCTCAAAATGAGTTGATTGGACATGCTCAAAGTTCTACCCCTGTGACGAATTGTCACAAACGCCATCCTCCGCCGTAA 672 0.4583 MCRGGRMFAPTKIWRKWHRKVNVNQKRYAVVSAIVASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHIGDFPDAEKAKNRHGIRPGKVMQGCCLLLLKYKDQAFKLLDLLGLCFSLDIASGPKALTSGVGKLLLPVNKKMDKKKTIFSCFSKYRKRSLKPDDVLKFGLIYAGAQKNVGPSGVTVMIAQNELIGHAQSSTPVTNCHKRHPPP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4153 223 Pfam Ribosomal protein L4/L1 family 1 82 IPR002136 GO:0003735|GO:0005840|GO:0006412
Psa6g4153 223 SUPERFAMILY PLP-dependent transferases 172 216 IPR015424 -
Psa6g4153 223 ProSitePatterns Aminotransferases class-V pyridoxal-phosphate attachment site. 178 197 IPR020578 -
Psa6g4153 223 ProSitePatterns Ribosomal protein L1e signature. 22 48 IPR013000 -
Psa6g4153 223 Gene3D - 138 220 IPR015421 GO:0003824
Psa6g4153 223 PANTHER 60S RIBOSOMAL PROTEIN L4 1 99 IPR045240 -
Psa6g4153 223 Gene3D - 1 105 IPR023574 GO:0003735|GO:0005840|GO:0006412
Psa6g4153 223 SUPERFAMILY Ribosomal protein L4 1 99 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4153 Psa-Chr6 366153426 366154305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4153 1 99 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 76.768 6.50e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4153 K02930 - gmx:100779764 168.318