Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4151 GAAGCAAAGCAAGTCAAGGTTCCTGTTGTTAGACCGATTAGTGAATTAGGTCCAATTGCTGTGCAAGAGCTTTTACCTGAGATTCCTCTATGGGTGAAGACACCAGATTATGAACGAGTTGATTGGTTGAACAAGTTTTTATTGGATATGTGGCCTTTCTTAGAGAAGGCAATCTGTGGGATAATTAGAACTACTGCAGAACCAATATTTGCTGAATACATTGGAAAGTATCAGATTAAAGCCATTGAGTTTGATCAATTGAGCCTTGGTACTCTTCCTCCTACTATCTGCGGTATGAAAGTTTTGGAAACAAATGAAAAGGAATTGGTCATGGAACAGGTTATCAAATGGGCTGGCAACCCAAACATAGTGTTGACCTTGCAGGTGTTGTCTTTAAAGATCAAAGTTCAGTTGGTAGACTTGCAAATATTTGTGACGCCGCGGATAACTTTAAGACCTTTGGTGCCGACACTTCCATGTTTTGCAAAGATTGTGGTGTCTTTGATGGAGAAGCCTCATGTGGATTTTGGGATGGCGATATCAGGAGGGGACGTCATGTCAATACCTGGTCTTTATAGATTTGTTCAGGAAACAATAAAAAAGCAAGTTGCAAGCCTCTATCTTTGGCCTCAAAGCTTGGAAGTTCCTATTCTTGATGAATCAACGGTGGCGATACAGAAGCCCGTGGGAATATTACATGTGAATGTGGTTAGAGCAATCAAGCTTTTGAAAATGGATTTGTTGGGAGCTTCTGATCCGTATGTCAAACTGAGTCTGACTGGTGACAAACTACCCTCGAAGAAAACTACTATCAAGAGAAAGAATTTGAATCCACAGTGGAACGAGAAATTCAAGATTGTTGTGAAGGACCCTCAATCTCAAGTTCTCCAATTACAAGTCTATGATTGGGACAAGGTTGGTGCACACGACAAGCTCGGAATGCAGTTAGTCCCTCTAAAGCTGCTTAAGCCGTACGAGAATAAAGAATTTACACTTGATTTGCTTAAGGACACGAATATCAACGAAACTCCAAATAAGAAGTTCAGAGGACAAATTGTGGTGGACTTGACTTTTGTTCCGTTCAAAGAAGATAGTATGAAATTCGGTGGATCTTCGGAAGGATATGTTAGAAAGGATAGTGGAATCGATAGTATATCTGATGATGAGGTCCAAGAAGGAGCAGGTTTGCTTTCCATTGTGATACAGGGAGCCGATGAAGTTGAGGGAGACCATCACAGTAATCCATACGCAATACTCACCTTTAGAGGCGAAAAGAAAAGGACAAAGATGATGAAGAAAACGCGTCAACCACGTTGGAATGAAGAATTCCAGTTCATGCTAGAAGAGGCTCCTCTACACGAGAAGATACACATTGAAGTGATGAGCAAGAGGAAGAGTTTCAGTTTTCTGTCAAAGGAATCGTTGGGGCATGTGGAGATAAACCTGAATGATGTGGTGCACAATGGTAGGATTAATGATAAATATCATCTGATAAATTCAAAGAATGGAGTAATACATGTTGAGATAAAATGGAAGGTGGCTTAA 1545 0.4058 EAKQVKVPVVRPISELGPIAVQELLPEIPLWVKTPDYERVDWLNKFLLDMWPFLEKAICGIIRTTAEPIFAEYIGKYQIKAIEFDQLSLGTLPPTICGMKVLETNEKELVMEQVIKWAGNPNIVLTLQVLSLKIKVQLVDLQIFVTPRITLRPLVPTLPCFAKIVVSLMEKPHVDFGMAISGGDVMSIPGLYRFVQETIKKQVASLYLWPQSLEVPILDESTVAIQKPVGILHVNVVRAIKLLKMDLLGASDPYVKLSLTGDKLPSKKTTIKRKNLNPQWNEKFKIVVKDPQSQVLQLQVYDWDKVGAHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNINETPNKKFRGQIVVDLTFVPFKEDSMKFGGSSEGYVRKDSGIDSISDDEVQEGAGLLSIVIQGADEVEGDHHSNPYAILTFRGEKKRTKMMKKTRQPRWNEEFQFMLEEAPLHEKIHIEVMSKRKSFSFLSKESLGHVEINLNDVVHNGRINDKYHLINSKNGVIHVEIKWKVA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4151 514 SMART C2_3c 231 331 IPR000008 -
Psa6g4151 514 SMART C2_3c 396 494 IPR000008 -
Psa6g4151 514 ProSiteProfiles C2 domain profile. 377 495 IPR000008 -
Psa6g4151 514 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 36 218 IPR031468 GO:0008289
Psa6g4151 514 Gene3D C2 domain 396 514 IPR035892 -
Psa6g4151 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 396 511 IPR035892 -
Psa6g4151 514 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 2 513 IPR045050 GO:0008289
Psa6g4151 514 CDD C2 413 498 - -
Psa6g4151 514 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 36 217 IPR039010 -
Psa6g4151 514 Gene3D C2 domain 225 373 IPR035892 -
Psa6g4151 514 ProSiteProfiles C2 domain profile. 209 332 IPR000008 -
Psa6g4151 514 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 226 362 IPR035892 -
Psa6g4151 514 CDD C2 232 334 - -
Psa6g4151 514 Pfam C2 domain 397 496 IPR000008 -
Psa6g4151 514 Pfam C2 domain 230 328 IPR000008 -
Psa6g4151 514 PANTHER SYNAPTOTAGMIN-3 2 513 - -
Psa6g4151 514 PRINTS C2 domain signature 247 259 IPR000008 -
Psa6g4151 514 PRINTS C2 domain signature 274 287 IPR000008 -
Psa6g4151 514 PRINTS C2 domain signature 296 304 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4151 Psa-Chr6 365736847 365740808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4151 229 313 C2H2 Transcription Factor Family AT4G05330 38.824 3.51e-09 56.6