Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4136 ATGGCGGCTTCGTCGTCGACATCATTCTTTGGAATCACAGAAGAAAATCAAAGTCAGATAACTCATCACCTTCATCTTCATCCTCAATCCACAACTACTTCTGCTACTTCCTCAGCTCCTTCAACCATAGTTCCTCAAAAGAAAAGAAGAAATCAACCAGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTCATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCAACATGTGTTCATCATGACCCTTCAAGAGCTTTAGGAGACCTCACTGGGATTAAAAAGCATTACTCGCGTAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAATGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCAAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGCGACAGTTTCATCACTCATAGGGCATTTTGTGATGCATTAGCACAAGAGAGTGTAATGAGACACCCTAACCCTTTTGGTACTCATCCTCATTTCCATGCCACAAACCACATGAGTTTAGGTCAAATTTCTCAGCAATTGCAACTTCATCAGAACCAAACATCATCTGCTAACAACAACATTTTGCGCCTTGGATCATCGGCGCCGAAGTTTGAGCAACACTTAATCTCATCACCGCGTTTGAATCACTCTACTACGTCATTTGGACAATACTCGGTTCCGTCTTCTTCATCGCCGTTCTTCAATATGAGTGATATTCCAAATCAATCCTTTGAAGAACACCGAGGACAATTCTCAAACAAGCAGCAACAACAACAACTACATGGTCTAATGCAACTTCCTGATCTTCAAGGAAACACGACAAGTAATAACTCGAATAATATTTTCAACCTCATGAATAATATTCATGAAGATCAATTCAACAACAATCCTCTTATTAGTGATCATCATCATCAATCACTCTTTATGGTCAACTCAAATATGCAACAACATGATCATCAAAACCAAAACCTGTCTAGTCCTCACATGTCAGCCACTGCATTACTTCAGAAAGCTTCTCAAATTGGTTCAACTAATTCAACCAACAACAACAAAGGTACTACAAATACTACTACTACTACCACATCTTTTGGAAATAGAAGTAGTTCAAGCATGGAACTAAATGATCATAACAACAATGATGAACTTCATGGATTAATAAACTCTATTGCAAATGGAAATGGAAACACATCCTCCATATTTGGCAATGAAAGTAACCTTAATATAGGGTTTGGTGAATCTGATAAGTTAACATTAGATTTTCTTGGTGTTGGTGGAATGGTCAGAAACATGAGTGCTCCTGGATTTTCACAAAATGAACAACAACATCATCAACAACAACAACATGTCATGGCTTCTATGAATCATAACCTAAAATCAGCTCAGTCAAGTCAACATTTCGGAAGCTCAAATTTGATGCAATGA 1590 0.3868 MAASSSTSFFGITEENQSQITHHLHLHPQSTTTSATSSAPSTIVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVMRHPNPFGTHPHFHATNHMSLGQISQQLQLHQNQTSSANNNILRLGSSAPKFEQHLISSPRLNHSTTSFGQYSVPSSSSPFFNMSDIPNQSFEEHRGQFSNKQQQQQLHGLMQLPDLQGNTTSNNSNNIFNLMNNIHEDQFNNNPLISDHHHQSLFMVNSNMQQHDHQNQNLSSPHMSATALLQKASQIGSTNSTNNNKGTTNTTTTTTSFGNRSSSSMELNDHNNNDELHGLINSIANGNGNTSSIFGNESNLNIGFGESDKLTLDFLGVGGMVRNMSAPGFSQNEQQHHQQQQHVMASMNHNLKSAQSSQHFGSSNLMQ* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4136 529 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 496 - -
Psa6g4136 529 Pfam Zinc-finger double-stranded RNA-binding 76 98 IPR022755 -
Psa6g4136 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Psa6g4136 529 SMART c2h2final6 152 172 IPR013087 -
Psa6g4136 529 SMART c2h2final6 76 98 IPR013087 -
Psa6g4136 529 SMART c2h2final6 117 147 IPR013087 -
Psa6g4136 529 MobiDBLite consensus disorder prediction 26 53 - -
Psa6g4136 529 MobiDBLite consensus disorder prediction 26 59 - -
Psa6g4136 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 496 - -
Psa6g4136 529 Gene3D Classic Zinc Finger 54 123 - -
Psa6g4136 529 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Psa6g4136 529 MobiDBLite consensus disorder prediction 398 427 - -
Psa6g4136 529 Gene3D Classic Zinc Finger 130 209 - -
Psa6g4136 529 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4136 Psa-Chr6 363807609 363811753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4136 71 486 C2H2 Transcription Factor Family AT2G02080 50.355 1.36e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g4136 zf-C2H2_jaz 3.2e-05 CL0361