Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4127 ATGAAATCCATAAACATGAGTGAAGAATGTGTTGGCAACACTATTGCTACTACCTCTACTACACCATTAAACTGGTGGTATCTTCAAGCAACAAACTCTCTTTCTTCTAATTGGAATGATGTTAATAAACTTGCATGGAGCAATCAAATGAATAATCCAAATTCTTCCTCTTCTTGTGATGATCAAGATATATCCGTTTCTTCGAATTCTTTCACTAATGCTTCAAACCATTCCTCTCTCACCGTTGATTCCTCTCGAAGAATACTCGAGTCACATGCACCTTCTTCTAATGACTTCATGGCTGAACATGCTTCAGATAACCAACTTTGGAGTCATGTTCTATCAGGTGTTGGATCAAATGGAGAGTTACAAAACAACCAAGAAATTGGAGAAAATTTCTTGGATGGACTTTCATCAAAAACCATGTTTGATGAGCCAGCTTGTGACTATTTGAAGAAACTTGATACAACAAATTGGGAATATAGTGGTTCAGCTTCATTCAATACAAGTTTTGAAAAGCACTTAAATGGGTACAGTGAAGCTCTTATTGAGAATAATGAAAGGTTGACAAAATTATCCAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTGAAGTTAGTAGCCACTTTGATCCACAAACAAACAACATATCAAATAATTTGAATTCCAATTCCTCCAATATTGATAATCATCACTTTGAATCTGACCCTAATTGTCATCTCAAACAATTACCTTTTGGAGATTCTATTGGAGGAGTAGGTAATAAAATGTTCTCTAATGTCCATGATATTCAAGACATGAATAAGGTTAAACAAGAATATCATCATCCTCATCATCATCATGGAAATCATGAAGTGTTTGGAAAATCATTTATGAATCCAAATGGATATCTTGATGGATTTAATAATAGTCTTAATTCAGTTGGAGAAAATGGAAAATTTTATCAAGGGTTGCCAAATATTTCACCATGCACCAAAAGTTTCTCAGATGTTATATCCTTTAATAGTAGGTTTGGAATCCATACACAAAGGCCTAGCATGAAATACTCAAACTTATCTGATTCAAGAAAGCAAGGACTTCACACACCTTCACATACGAGGACTAGTAGTGGAAGAGACGGGACAACGCGTGAAGTAAAGAAGAAAAGATCCGAAGAATCATTAGAAGCAAACTTGAAGAAGCCAAAACAAGATACATCAACAACTAATTCATCTTCTTCAAAGGTGCAAGCACCTAAAGTCAAGCTAGGAGAAAAGATCACAGCTCTTCAACAAATTGTATCTCCTTTTGGAAAGACAGATACAGCTTCAGTGCTGTTTGAAGCAATAGGGTACATAAAGTATCTTGAAGAACAAGTCCAGCTACTGAGTAACCCTTACTTGAAGGCAAATTCACACAAGGATCCAAGGGGAATGTACTTTGACAGAAAGGATAAGGAAGATGCGAAAATGGATCTTCGAAGTCGAGGTCTTTGTTTAGTTCCAACTTCATGTACACCTGTAGTTTATAGAGAGAACACTGGACCAGATTACTGGACACCAGCATATAGAGGATGTTTGTATAGGTAA 1575 0.3632 MKSINMSEECVGNTIATTSTTPLNWWYLQATNSLSSNWNDVNKLAWSNQMNNPNSSSSCDDQDISVSSNSFTNASNHSSLTVDSSRRILESHAPSSNDFMAEHASDNQLWSHVLSGVGSNGELQNNQEIGENFLDGLSSKTMFDEPACDYLKKLDTTNWEYSGSASFNTSFEKHLNGYSEALIENNERLTKLSNLVSTWSIAPPDPEVSSHFDPQTNNISNNLNSNSSNIDNHHFESDPNCHLKQLPFGDSIGGVGNKMFSNVHDIQDMNKVKQEYHHPHHHHGNHEVFGKSFMNPNGYLDGFNNSLNSVGENGKFYQGLPNISPCTKSFSDVISFNSRFGIHTQRPSMKYSNLSDSRKQGLHTPSHTRTSSGRDGTTREVKKKRSEESLEANLKKPKQDTSTTNSSSSKVQAPKVKLGEKITALQQIVSPFGKTDTASVLFEAIGYIKYLEEQVQLLSNPYLKANSHKDPRGMYFDRKDKEDAKMDLRSRGLCLVPTSCTPVVYRENTGPDYWTPAYRGCLYR* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4127 524 PANTHER TRANSCRIPTION FACTOR BHLH111 39 510 - -
Psa6g4127 524 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 510 - -
Psa6g4127 524 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 402 451 IPR011598 GO:0046983
Psa6g4127 524 CDD bHLH_AtbHLH_like 417 459 IPR045239 -
Psa6g4127 524 MobiDBLite consensus disorder prediction 396 413 - -
Psa6g4127 524 MobiDBLite consensus disorder prediction 347 415 - -
Psa6g4127 524 MobiDBLite consensus disorder prediction 347 372 - -
Psa6g4127 524 MobiDBLite consensus disorder prediction 373 395 - -
Psa6g4127 524 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 417 466 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4127 Psa-Chr6 363190044 363193382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4127 346 524 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 43.956 1.66e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4127 - - cam:101498929 748.429