Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4112 ATGGGTGGGAGCGAGAACTTGAAGGCTATGGTTGTGGGTCGTTTGTCTGATGTCATCAGGGAGATTTCCGGGTTGCCGGAATGTCAAAACGTGTGCAAGAGGATGTATGGGAATTTGATCCGTAGGGTGAAGCTTTTGAGTCCTTTGTTTGAGGAATTGAAGGATTCTGATGAATCCCTTTGTGAAGAACAGCTTGAAGCTTTTGAAGCTTTAAGGGTTTCTTTGGATTTGGCTATGATCCTTCTAAAGTCTGTTAACCAAGGAAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATGCAGCGGATAAGTTCCAACTAGTAACTGAAAAAATTGAAGCTGCATTGAGTAATATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAGTTGGTGCATGCTCAGTTCAAAAGAGCGAAAGCTCAAACCGAATTCGCTGATTTACAACTAGATTTGGATATGGCTGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTTCCGAGAAGTTGCATCTGAGGACTATAAATGATTTAAAGAAAGAATCTAGTGAGTTACACGAATTGGTCATAACAAGCGATGGAGAATTAGCGGACAGTTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCTGAGGTTGATAATGCATACGAGAACGAGAAAGAGTCAATTAAGCACCGGTCTCCGGTAATCCCAGATGATTTTCGATGTCCTATATCGCTTGAACTAATGAAGGATCCTGTAATTGTATCTACCGGTCAGACATATGAAAGATCATGCATTCAAAAATGGCTTGATGCTGGTCATAGAACTTGCCCTAAAACACAGCAAACGCTTTTGCATACAGCCCTTACTCCTAACTATGTATTGAAGAGTCTGATTGGTTTATGGTGCGAAAGCAATGGTGTTGAGCTACCAAAGAAGCAAGGTAGCTGTAAAACAACGAAATCCGGAACCAGTCTTTCCGATTGTGACAGAATTGCTATCAAAGCTTTGTTGGATAAACTAACAAGTAACGATATTGAACAGCAAAGGGCGGCAGCTGGTGAGCTCCGGTTGCTGGCCAAGAGGAATGCTGATAACCGAGTCTGTATTGCCGAGGCAGGAGCGATACCGCTTCTCGTAGAGTTGTTGTCTTCTGGGGATCCTCGAACTCAAGAGCACGCCGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCCGATATTGTTGATGTACTGAAAAACGGAAGCATGGAGGCTAGAGAAAACGCAGCCGCGACTCTCTTTAGTTTATCGGTCCTAGACGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGCTACTTTGCGAAGGTACTCCAAGAGGCAAAAAAGATGCGGCTACAGCTATATTTAATCTCTGTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAAGCCGGGATAGTTGCTGCACTGATACGGTTTATGAAGGACGCGGGGGGTGGGATGGTTGACGAAGCGCTAGCTATAATGGCGATCCTTGCAGGCCATCATGAAGGCAGGATGGCGATCGGTCAGGCCGAGCCAATCCCTATTTTAGTCGAGGTTATACGAACCGGATCACCGCGAAATCGGGAGAATGCTGCTGCGGTTTTGTGGTCGATATGCACAGGAGATTTACTGCAATTGAAACTAGCCAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAAAGAATTGAAGGGGAGGATAGTTTGCAAAATTCCTAG 1896 0.4367 MGGSENLKAMVVGRLSDVIREISGLPECQNVCKRMYGNLIRRVKLLSPLFEELKDSDESLCEEQLEAFEALRVSLDLAMILLKSVNQGSKLYQALRRNDAADKFQLVTEKIEAALSNISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDMAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVITSDGELADSFETVSSLLRKLKDWVLTENPEVDNAYENEKESIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGSCKTTKSGTSLSDCDRIAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSICTGDLLQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4112 631 Gene3D - 9 122 IPR036537 GO:0007166
Psa6g4112 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Psa6g4112 631 PANTHER U BOX DOMAIN-CONTAINING 12 623 - -
Psa6g4112 631 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 14 12 623 - -
Psa6g4112 631 Coils Coil 126 146 - -
Psa6g4112 631 SMART arm_5 539 579 IPR000225 GO:0005515
Psa6g4112 631 SMART arm_5 457 497 IPR000225 GO:0005515
Psa6g4112 631 SMART arm_5 498 538 IPR000225 GO:0005515
Psa6g4112 631 SMART arm_5 416 456 IPR000225 GO:0005515
Psa6g4112 631 SMART arm_5 375 415 IPR000225 GO:0005515
Psa6g4112 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Psa6g4112 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Psa6g4112 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Psa6g4112 631 Gene3D - 328 457 IPR011989 -
Psa6g4112 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Psa6g4112 631 CDD RING-Ubox_PUB 252 294 IPR045210 -
Psa6g4112 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Psa6g4112 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Psa6g4112 631 Gene3D - 458 623 IPR011989 -
Psa6g4112 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Psa6g4112 631 SUPERFAMILY RING/U-box 239 323 - -
Psa6g4112 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4112 Psa-Chr6 361624928 361628046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4112 11 624 U-box Gene Family AT3G54850 66.667 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4112 - - gmx:100777452 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g4112 6 361624928 361628046 Psa6g4112 6 361624928 361628046 ECH