Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g4095 ATGATACAAGAAGATCAAGGGCAGTGTTCATCTCAAACAATGAACAACTTTGAAACCTATCAACAAGAACAGTTTCTTCTCCATCAACAACAAATCATGCGGCAACAAAACAGTTTCACTTTCCCAGGTGATCATCATCAAGTTGTTTCTTCGCCAATCTTGCAACAACCATGGTCATCTATGTCTATGCAACAATTCCATGTCCATGACCCTTTTGTTCTTCCTCAACAACAAACTTCATCATCACCTTACGCAAGCTTGTTCAACAGATCTTCTAGGGTTCCTTCTCTTCAGTTTGCATACGATCATCATCATCATCATCATCATCATCATCATGGAGGGTCTGAACAGCATCTTAGGATCATATCTGATACACTTCACCAACATGGATCCTTTGGTGGACTTCAATATCAAGGTGGTGATGTTGGAAAGATGAGTGCTCAAGAAATCATGGAGGCTAAAGCTCTTGCTGCTTCCAAGAGTCATAGTGAAGCTGAGAGAAGACGCAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTACCAAGCACAACCAAAACGGATAAAGCATCATTGCTAGCAGAAGTGATACAGCATGTGAAAGAGTTGAAGCGTCAAACATCATTAATAGCAGAAACATGTCAAGTTCCAACGGAATGTGATGAGTTAACAGTAGATGCTGCAAATGATGATGATGATGAAGAATGTGGAAACGGAAACGGAAACAAGTTTATTCTTAAAGCTTCACTTTGCTGTGATGATAGGTCAGATCTTTTGCCTGAATTAATCAAGACATTGAAAGCATTAAGGTTGAGAACATTGAAAGCTGATATAACAACACTTGGAGGACGTGTTAAGAATGTTTTGTTCATCACTGGTGAAGATCATGATCATGAATATTGCATTAGTTCAATACAAGAAGCACTTAAAGCTGTGATGGAGAAGAGTGTTGGAGATGAATCTGCTTCTGGAAATGTTAAGAGACAAAGGACTAATATAATATCTATATCTAATTAG 1026 0.385 MIQEDQGQCSSQTMNNFETYQQEQFLLHQQQIMRQQNSFTFPGDHHQVVSSPILQQPWSSMSMQQFHVHDPFVLPQQQTSSSPYASLFNRSSRVPSLQFAYDHHHHHHHHHHGGSEQHLRIISDTLHQHGSFGGLQYQGGDVGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETCQVPTECDELTVDAANDDDDEECGNGNGNKFILKASLCCDDRSDLLPELIKTLKALRLRTLKADITTLGGRVKNVLFITGEDHDHEYCISSIQEALKAVMEKSVGDESASGNVKRQRTNIISISN* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g4095 341 CDD bHLH_AtAIG1_like 152 228 - -
Psa6g4095 341 Pfam Helix-loop-helix DNA-binding domain 160 206 IPR011598 GO:0046983
Psa6g4095 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Psa6g4095 341 SMART finulus 163 212 IPR011598 GO:0046983
Psa6g4095 341 PANTHER TRANSCRIPTION FACTOR BHLH30 60 339 IPR045847 GO:0003700|GO:0006355
Psa6g4095 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 214 IPR036638 GO:0046983
Psa6g4095 341 Gene3D - 152 213 IPR036638 GO:0046983
Psa6g4095 341 PANTHER TRANSCRIPTION FACTOR BHLH30 60 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g4095 Psa-Chr6 358806956 358809042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g4095 10 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 52.500 1.52e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g4095 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g4095 - - pvu:PHAVU_007G101900g 355.91